EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0030604 (Gene tree)
Gene ID: -
Gene Symbol: Prdm5
Alias: 4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2
Full Name: PR domain containing 5
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Plus strand
Length: 155493 bases
Position: chr6:62068534-62224026
Accession: 1918029
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0077535	zf-C2H2	PF00096.26	5.6e-59	1	9
MGP_FVBNJ_P0077535	zf-C2H2	PF00096.26	5.6e-59	2	9
MGP_FVBNJ_P0077535	zf-C2H2	PF00096.26	5.6e-59	3	9
MGP_FVBNJ_P0077535	zf-C2H2	PF00096.26	5.6e-59	4	9
MGP_FVBNJ_P0077535	zf-C2H2	PF00096.26	5.6e-59	5	9
MGP_FVBNJ_P0077535	zf-C2H2	PF00096.26	5.6e-59	6	9
MGP_FVBNJ_P0077535	zf-C2H2	PF00096.26	5.6e-59	7	9
MGP_FVBNJ_P0077535	zf-C2H2	PF00096.26	5.6e-59	8	9
MGP_FVBNJ_P0077535	zf-C2H2	PF00096.26	5.6e-59	9	9
MGP_FVBNJ_P0077530	zf-C2H2	PF00096.26	1e-58	1	9
MGP_FVBNJ_P0077530	zf-C2H2	PF00096.26	1e-58	2	9
MGP_FVBNJ_P0077530	zf-C2H2	PF00096.26	1e-58	3	9
MGP_FVBNJ_P0077530	zf-C2H2	PF00096.26	1e-58	4	9
MGP_FVBNJ_P0077530	zf-C2H2	PF00096.26	1e-58	5	9
MGP_FVBNJ_P0077530	zf-C2H2	PF00096.26	1e-58	6	9
MGP_FVBNJ_P0077530	zf-C2H2	PF00096.26	1e-58	7	9
MGP_FVBNJ_P0077530	zf-C2H2	PF00096.26	1e-58	8	9
MGP_FVBNJ_P0077530	zf-C2H2	PF00096.26	1e-58	9	9
MGP_FVBNJ_P0077533	zf-C2H2	PF00096.26	1e-48	1	9
MGP_FVBNJ_P0077533	zf-C2H2	PF00096.26	1e-48	2	9
MGP_FVBNJ_P0077533	zf-C2H2	PF00096.26	1e-48	3	9
MGP_FVBNJ_P0077533	zf-C2H2	PF00096.26	1e-48	4	9
MGP_FVBNJ_P0077533	zf-C2H2	PF00096.26	1e-48	5	9
MGP_FVBNJ_P0077533	zf-C2H2	PF00096.26	1e-48	6	9
MGP_FVBNJ_P0077533	zf-C2H2	PF00096.26	1e-48	7	9
MGP_FVBNJ_P0077533	zf-C2H2	PF00096.26	1e-48	8	9
MGP_FVBNJ_P0077533	zf-C2H2	PF00096.26	1e-48	9	9
MGP_FVBNJ_P0077532	zf-C2H2	PF00096.26	8.1e-27	1	5
MGP_FVBNJ_P0077532	zf-C2H2	PF00096.26	8.1e-27	2	5
MGP_FVBNJ_P0077532	zf-C2H2	PF00096.26	8.1e-27	3	5
MGP_FVBNJ_P0077532	zf-C2H2	PF00096.26	8.1e-27	4	5
MGP_FVBNJ_P0077532	zf-C2H2	PF00096.26	8.1e-27	5	5
MGP_FVBNJ_P0077535	zf-met	PF12874.7	1.5e-20	1	3
MGP_FVBNJ_P0077535	zf-met	PF12874.7	1.5e-20	2	3
MGP_FVBNJ_P0077535	zf-met	PF12874.7	1.5e-20	3	3
MGP_FVBNJ_P0077530	zf-met	PF12874.7	2.7e-20	1	3
MGP_FVBNJ_P0077530	zf-met	PF12874.7	2.7e-20	2	3
MGP_FVBNJ_P0077530	zf-met	PF12874.7	2.7e-20	3	3
MGP_FVBNJ_P0077533	zf-met	PF12874.7	8.8e-17	1	3
MGP_FVBNJ_P0077533	zf-met	PF12874.7	8.8e-17	2	3
MGP_FVBNJ_P0077533	zf-met	PF12874.7	8.8e-17	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0077536	-	1920	-	-	- (aa)	-	-
MGP_FVBNJ_T0077534	-	4168	-	-	- (aa)	-	-
MGP_FVBNJ_T0077535	-	1935	-	MGP_FVBNJ_P0077535	579 (aa)	-	-
MGP_FVBNJ_T0077532	-	984	-	MGP_FVBNJ_P0077532	221 (aa)	-	-
MGP_FVBNJ_T0077533	-	1488	-	MGP_FVBNJ_P0077533	415 (aa)	-	-
MGP_FVBNJ_T0077530	-	2155	XM_006506600	MGP_FVBNJ_P0077530	599 (aa)	XP_006506663	Q9CXE0
MGP_FVBNJ_T0077531	-	1872	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_FVBNJ_G0030604's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0030604's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0030604	Prdm5	74	43.846	MGP_FVBNJ_G0029613	Gfi1	99	45.133
MGP_FVBNJ_G0030604	Prdm5	84	36.545	MGP_FVBNJ_G0018226	Zfp867	94	36.545
MGP_FVBNJ_G0030604	Prdm5	78	34.752	MGP_FVBNJ_G0033745	Zfp319	88	34.602
MGP_FVBNJ_G0030604	Prdm5	77	44.643	MGP_FVBNJ_G0030950	Zfp637	83	46.479
MGP_FVBNJ_G0030604	Prdm5	95	43.220	MGP_FVBNJ_G0023028	Zfp677	78	36.027
MGP_FVBNJ_G0030604	Prdm5	67	50.847	MGP_FVBNJ_G0033900	Zfp1	67	40.167
MGP_FVBNJ_G0030604	Prdm5	79	40.244	MGP_FVBNJ_G0029280	Zbtb49	96	45.070
MGP_FVBNJ_G0030604	Prdm5	84	32.735	MGP_FVBNJ_G0031348	Zfp865	78	32.895
MGP_FVBNJ_G0030604	Prdm5	74	40.104	MGP_FVBNJ_G0031340	Zfp628	60	38.208
MGP_FVBNJ_G0030604	Prdm5	90	42.609	MGP_FVBNJ_G0033529	Zfp882	94	35.714
MGP_FVBNJ_G0030604	Prdm5	73	44.286	MGP_FVBNJ_G0031593	Zfp235	69	39.608
MGP_FVBNJ_G0030604	Prdm5	69	47.857	MGP_FVBNJ_G0031592	Zfp112	68	39.711
MGP_FVBNJ_G0030604	Prdm5	93	38.115	MGP_FVBNJ_G0031597	Zfp108	66	38.115
MGP_FVBNJ_G0030604	Prdm5	87	49.194	MGP_FVBNJ_G0031595	Zfp111	70	41.528
MGP_FVBNJ_G0030604	Prdm5	86	45.455	MGP_FVBNJ_G0031594	Zfp114	67	38.462
MGP_FVBNJ_G0030604	Prdm5	86	46.739	MGP_FVBNJ_G0024402	Zfp236	77	43.860
MGP_FVBNJ_G0030604	Prdm5	75	34.545	MGP_FVBNJ_G0026729	Zfp64	69	31.561
MGP_FVBNJ_G0030604	Prdm5	98	38.322	MGP_FVBNJ_G0023030	Zfp51	99	38.889
MGP_FVBNJ_G0030604	Prdm5	78	38.571	MGP_FVBNJ_G0018082	Zfp454	68	38.571
MGP_FVBNJ_G0030604	Prdm5	73	40.562	MGP_FVBNJ_G0032808	Zfp768	53	43.571
MGP_FVBNJ_G0030604	Prdm5	76	40.000	MGP_FVBNJ_G0018810	Zfp652	50	36.242
MGP_FVBNJ_G0030604	Prdm5	91	39.062	MGP_FVBNJ_G0021824	Zfp251	66	43.005
MGP_FVBNJ_G0030604	Prdm5	78	44.138	MGP_FVBNJ_G0020090	Zkscan4	56	47.826
MGP_FVBNJ_G0030604	Prdm5	76	49.451	MGP_FVBNJ_G0034174	Zfp26	70	49.451
MGP_FVBNJ_G0030604	Prdm5	61	45.045	MGP_FVBNJ_G0026026	Wt1	55	40.876
MGP_FVBNJ_G0030604	Prdm5	74	37.838	MGP_FVBNJ_G0032811	E430018J23Rik	63	37.838
MGP_FVBNJ_G0030604	Prdm5	73	43.511	MGP_FVBNJ_G0032810	Zfp747	57	43.511
MGP_FVBNJ_G0030604	Prdm5	84	43.277	MGP_FVBNJ_G0020510	Rslcan18	71	39.200
MGP_FVBNJ_G0030604	Prdm5	68	48.544	MGP_FVBNJ_G0033983	Snai3	55	42.336
MGP_FVBNJ_G0030604	Prdm5	91	48.387	MGP_FVBNJ_G0031768	Zfp420	95	41.722
MGP_FVBNJ_G0030604	Prdm5	81	42.941	MGP_FVBNJ_G0026260	Zfp661	65	42.941
MGP_FVBNJ_G0030604	Prdm5	74	48.913	MGP_FVBNJ_G0031600	Zfp94	77	38.489
MGP_FVBNJ_G0030604	Prdm5	72	48.760	MGP_FVBNJ_G0031902	Zfp715	66	39.333
MGP_FVBNJ_G0030604	Prdm5	68	47.826	MGP_FVBNJ_G0031599	Zfp61	53	41.525
MGP_FVBNJ_G0030604	Prdm5	68	42.361	MGP_FVBNJ_G0030470	Repin1	91	33.016
MGP_FVBNJ_G0030604	Prdm5	93	45.185	MGP_FVBNJ_G0026691	Zfp334	67	40.000
MGP_FVBNJ_G0030604	Prdm5	88	42.857	MGP_FVBNJ_G0018176	Zfp672	86	44.286
MGP_FVBNJ_G0030604	Prdm5	76	39.057	MGP_FVBNJ_G0031891	-	69	39.057
MGP_FVBNJ_G0030604	Prdm5	67	46.667	MGP_FVBNJ_G0031630	Zfp574	85	30.051
MGP_FVBNJ_G0030604	Prdm5	83	38.014	MGP_FVBNJ_G0020511	Zfp759	94	38.870
MGP_FVBNJ_G0030604	Prdm5	70	48.315	MGP_FVBNJ_G0023051	Zfp945	77	48.315
MGP_FVBNJ_G0030604	Prdm5	90	35.235	MGP_FVBNJ_G0023058	Zscan10	88	44.915