EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0030747 (Gene tree)
Gene ID: -
Gene Symbol: Tia1
Alias: 2310050N03Rik|AI256674|TIA-1|Tia|mTIA-1
Full Name: cytotoxic granule-associated RNA binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Plus strand
Length: 29226 bases
Position: chr6:82805769-82834994
Accession: 107914
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0078205	RRM_1	PF00076.22	4.5e-68	1	3
MGP_FVBNJ_P0078205	RRM_1	PF00076.22	4.5e-68	2	3
MGP_FVBNJ_P0078205	RRM_1	PF00076.22	4.5e-68	3	3
MGP_FVBNJ_P0078199	RRM_1	PF00076.22	1.9e-67	1	3
MGP_FVBNJ_P0078199	RRM_1	PF00076.22	1.9e-67	2	3
MGP_FVBNJ_P0078199	RRM_1	PF00076.22	1.9e-67	3	3
MGP_FVBNJ_P0078191	RRM_1	PF00076.22	2.1e-67	1	3
MGP_FVBNJ_P0078191	RRM_1	PF00076.22	2.1e-67	2	3
MGP_FVBNJ_P0078191	RRM_1	PF00076.22	2.1e-67	3	3
MGP_FVBNJ_P0078192	RRM_1	PF00076.22	2.1e-67	1	3
MGP_FVBNJ_P0078192	RRM_1	PF00076.22	2.1e-67	2	3
MGP_FVBNJ_P0078192	RRM_1	PF00076.22	2.1e-67	3	3
MGP_FVBNJ_P0078200	RRM_1	PF00076.22	2.3e-58	1	3
MGP_FVBNJ_P0078200	RRM_1	PF00076.22	2.3e-58	2	3
MGP_FVBNJ_P0078200	RRM_1	PF00076.22	2.3e-58	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0078195	-	4420	-	-	- (aa)	-	-
MGP_FVBNJ_T0078194	-	422	-	-	- (aa)	-	-
MGP_FVBNJ_T0078197	-	1203	-	MGP_FVBNJ_P0078197	133 (aa)	-	-
MGP_FVBNJ_T0078196	-	612	-	-	- (aa)	-	-
MGP_FVBNJ_T0078191	-	1789	XM_006505889	MGP_FVBNJ_P0078191	385 (aa)	XP_006505952	P52912
MGP_FVBNJ_T0078213	-	627	-	-	- (aa)	-	-
MGP_FVBNJ_T0078193	-	934	-	-	- (aa)	-	-
MGP_FVBNJ_T0078192	-	4476	-	MGP_FVBNJ_P0078192	386 (aa)	-	-
MGP_FVBNJ_T0078199	-	3129	-	MGP_FVBNJ_P0078199	375 (aa)	-	-
MGP_FVBNJ_T0078198	-	3854	-	-	- (aa)	-	-
MGP_FVBNJ_T0078218	-	597	-	MGP_FVBNJ_P0078218	105 (aa)	-	-
MGP_FVBNJ_T0078216	-	716	-	-	- (aa)	-	-
MGP_FVBNJ_T0078217	-	585	-	-	- (aa)	-	-
MGP_FVBNJ_T0078214	-	877	-	-	- (aa)	-	-
MGP_FVBNJ_T0078215	-	2504	-	-	- (aa)	-	-
MGP_FVBNJ_T0078212	-	758	-	-	- (aa)	-	-
MGP_FVBNJ_T0078205	-	3107	-	MGP_FVBNJ_P0078205	377 (aa)	-	-
MGP_FVBNJ_T0078204	-	1178	-	-	- (aa)	-	-
MGP_FVBNJ_T0078207	-	823	-	-	- (aa)	-	-
MGP_FVBNJ_T0078206	-	864	-	-	- (aa)	-	-
MGP_FVBNJ_T0078201	-	1290	-	MGP_FVBNJ_P0078201	93 (aa)	-	-
MGP_FVBNJ_T0078200	-	1444	-	MGP_FVBNJ_P0078200	285 (aa)	-	-
MGP_FVBNJ_T0078203	-	4325	-	MGP_FVBNJ_P0078203	212 (aa)	-	-
MGP_FVBNJ_T0078202	-	797	-	-	- (aa)	-	-
MGP_FVBNJ_T0078211	-	750	-	-	- (aa)	-	-
MGP_FVBNJ_T0078209	-	2664	-	-	- (aa)	-	-
MGP_FVBNJ_T0078208	-	1882	-	-	- (aa)	-	-
MGP_FVBNJ_T0078210	-	706	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_FVBNJ_G0030747's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0030747's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0030747	Tia1	78	36.000	MGP_FVBNJ_G0022535	Ncbp2	51	36.000
MGP_FVBNJ_G0030747	Tia1	93	38.667	MGP_FVBNJ_G0027344	Celf3	76	38.462
MGP_FVBNJ_G0030747	Tia1	60	31.285	MGP_FVBNJ_G0028646	Trnau1ap	79	30.198
MGP_FVBNJ_G0030747	Tia1	85	36.000	MGP_FVBNJ_G0034657	Celf6	62	32.955
MGP_FVBNJ_G0030747	Tia1	80	37.778	MGP_FVBNJ_G0017321	Cirbp	91	35.714
MGP_FVBNJ_G0030747	Tia1	87	38.095	MGP_FVBNJ_G0026632	Pabpc1l	59	38.095
MGP_FVBNJ_G0030747	Tia1	89	34.615	MGP_FVBNJ_G0028225	Elavl2	96	34.615
MGP_FVBNJ_G0030747	Tia1	83	35.443	MGP_FVBNJ_G0025138	Celf2	51	35.443
MGP_FVBNJ_G0030747	Tia1	95	33.333	MGP_FVBNJ_G0028517	Pabpc4	100	39.394
MGP_FVBNJ_G0030747	Tia1	97	86.992	MGP_FVBNJ_G0032858	Tial1	100	87.440
MGP_FVBNJ_G0030747	Tia1	84	34.247	MGP_FVBNJ_G0035793	Pabpc5	93	33.333
MGP_FVBNJ_G0030747	Tia1	98	31.169	MGP_FVBNJ_G0034229	Elavl3	90	37.179
MGP_FVBNJ_G0030747	Tia1	88	34.568	MGP_FVBNJ_G0017395	Celf5	56	32.222
MGP_FVBNJ_G0030747	Tia1	80	34.043	MGP_FVBNJ_G0035499	Rbmx	98	34.409
MGP_FVBNJ_G0030747	Tia1	73	35.366	MGP_FVBNJ_G0016682	Rbm8a2	53	35.870
MGP_FVBNJ_G0030747	Tia1	77	35.870	MGP_FVBNJ_G0027415	Rbm8a	54	35.870
MGP_FVBNJ_G0030747	Tia1	95	30.000	MGP_FVBNJ_G0026984	Pabpc4l	95	30.539
MGP_FVBNJ_G0030747	Tia1	95	33.835	MGP_FVBNJ_G0024168	Pabpc2	57	35.443
MGP_FVBNJ_G0030747	Tia1	70	41.333	MGP_FVBNJ_G0035297	Rbm3	99	35.955
MGP_FVBNJ_G0030747	Tia1	69	32.308	MGP_FVBNJ_G0029552	Hnrnpd	55	35.593
MGP_FVBNJ_G0030747	Tia1	99	31.579	MGP_FVBNJ_G0033102	Elavl1	95	32.298
MGP_FVBNJ_G0030747	Tia1	96	36.905	MGP_FVBNJ_G0022945	Pabpc6	58	36.905
MGP_FVBNJ_G0030747	Tia1	87	32.911	MGP_FVBNJ_G0024008	Celf4	63	30.682
MGP_FVBNJ_G0030747	Tia1	98	32.895	MGP_FVBNJ_G0028357	Elavl4	94	35.897
MGP_FVBNJ_G0030747	Tia1	87	38.095	MGP_FVBNJ_G0021609	Pabpc1	54	38.095