EuRBPDB

Description

Ensembl ID: MGP_FVBNJ_G0030822 (Gene tree)
Gene ID: -
Gene Symbol: Lsm3
Alias: 1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2
Full Name: LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Plus strand
Length: 6674 bases
Position: chr6:87960009-87966682
Accession: 1914928
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0078564	LSM	PF01423.22	8.4e-20	1	1
MGP_FVBNJ_P0078568	LSM	PF01423.22	8.4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0078568	-	618	-	MGP_FVBNJ_P0078568	102 (aa)	-	-
MGP_FVBNJ_T0078564	-	743	-	MGP_FVBNJ_P0078564	102 (aa)	-	P62311
MGP_FVBNJ_T0078565	-	520	-	-	- (aa)	-	-
MGP_FVBNJ_T0078566	-	2030	-	-	- (aa)	-	-
MGP_FVBNJ_T0078567	-	504	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0030822	Lsm3	77	31.707	MGP_FVBNJ_G0031534	Snrpd2	69	31.707
MGP_FVBNJ_G0030822	Lsm3	74	34.667	MGP_FVBNJ_G0030549	Lsm5	82	34.667