EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0031680 (Gene tree)
Gene ID: -
Gene Symbol: Snrpa
Alias: C430021M15Rik|Rnu1a-1|Rnu1a1|U1 snRNP|U1-A|U1A
Full Name: small nuclear ribonucleoprotein polypeptide A
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Minus strand
Length: 9267 bases
Position: chr7:25084906-25094172
Accession: 1855690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0082059	RRM_5	PF13893.6	4.7e-07	1	2
MGP_FVBNJ_P0082059	RRM_5	PF13893.6	4.7e-07	2	2
MGP_FVBNJ_P0082060	RRM_5	PF13893.6	4.7e-07	1	2
MGP_FVBNJ_P0082060	RRM_5	PF13893.6	4.7e-07	2	2
MGP_FVBNJ_P0082061	RRM_5	PF13893.6	4.7e-07	1	2
MGP_FVBNJ_P0082061	RRM_5	PF13893.6	4.7e-07	2	2
MGP_FVBNJ_P0082059	RRM_1	PF00076.22	4.5e-28	1	2
MGP_FVBNJ_P0082059	RRM_1	PF00076.22	4.5e-28	2	2
MGP_FVBNJ_P0082060	RRM_1	PF00076.22	4.5e-28	1	2
MGP_FVBNJ_P0082060	RRM_1	PF00076.22	4.5e-28	2	2
MGP_FVBNJ_P0082061	RRM_1	PF00076.22	4.5e-28	1	2
MGP_FVBNJ_P0082061	RRM_1	PF00076.22	4.5e-28	2	2
MGP_FVBNJ_P0082062	RRM_1	PF00076.22	1.1e-18	1	2
MGP_FVBNJ_P0082062	RRM_1	PF00076.22	1.1e-18	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0082064	-	1690	-	-	- (aa)	-	-
MGP_FVBNJ_T0082060	-	1336	-	MGP_FVBNJ_P0082060	287 (aa)	-	-
MGP_FVBNJ_T0082061	-	1365	-	MGP_FVBNJ_P0082061	287 (aa)	-	-
MGP_FVBNJ_T0082062	-	968	-	MGP_FVBNJ_P0082062	247 (aa)	-	-
MGP_FVBNJ_T0082063	-	510	-	MGP_FVBNJ_P0082063	44 (aa)	-	-
MGP_FVBNJ_T0082059	-	1288	-	MGP_FVBNJ_P0082059	287 (aa)	-	-
MGP_FVBNJ_T0082058	-	509	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_FVBNJ_G0031680's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0031680's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0031680	Snrpa	99	90.141	MGP_FVBNJ_G0023011	Gm5145	100	90.141
MGP_FVBNJ_G0031680	Snrpa	97	55.235	MGP_FVBNJ_G0026371	Snrpb2	99	63.121