EuRBPDB

Description

Ensembl ID: MGP_FVBNJ_G0031997 (Gene tree)
Gene ID: -
Gene Symbol: Snrnp70
Alias: 2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Snrp70 {ECO:0000313|EMBL:EDL22845.1,GN ECO:0000313|MGI:MGI:98341}|Srnp70|U1-70|U1-70K
Full Name: small nuclear ribonucleoprotein 70 (U1)
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Minus strand
Length: 22040 bases
Position: chr7:44204444-44226483
Accession: 98341
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0083377	RRM_1	PF00076.22	1.1e-17	1	1
MGP_FVBNJ_P0083386	RRM_1	PF00076.22	4e-13	1	1
MGP_FVBNJ_P0083378	RRM_1	PF00076.22	2.1e-08	1	1
MGP_FVBNJ_P0083388	U1snRNP70_N	PF12220.8	5.5e-29	1	1
MGP_FVBNJ_P0083386	U1snRNP70_N	PF12220.8	1.5e-28	1	1
MGP_FVBNJ_P0083377	U1snRNP70_N	PF12220.8	1.9e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0083386	-	618	-	MGP_FVBNJ_P0083386	168 (aa)	-	-
MGP_FVBNJ_T0083387	-	601	-	-	- (aa)	-	-
MGP_FVBNJ_T0083379	-	4008	-	-	- (aa)	-	-
MGP_FVBNJ_T0083378	-	451	-	MGP_FVBNJ_P0083378	86 (aa)	-	-
MGP_FVBNJ_T0083382	-	2922	-	-	- (aa)	-	-
MGP_FVBNJ_T0083383	-	733	-	-	- (aa)	-	-
MGP_FVBNJ_T0083380	-	3035	-	-	- (aa)	-	-
MGP_FVBNJ_T0083381	-	707	-	MGP_FVBNJ_P0083381	115 (aa)	-	-
MGP_FVBNJ_T0083377	-	1735	XM_006540732	MGP_FVBNJ_P0083377	448 (aa)	XP_006540795	Q62376
MGP_FVBNJ_T0083384	-	623	-	-	- (aa)	-	-
MGP_FVBNJ_T0083388	-	620	-	MGP_FVBNJ_P0083388	109 (aa)	-	-
MGP_FVBNJ_T0083389	-	212	-	-	- (aa)	-	-
MGP_FVBNJ_T0083385	-	616	-	MGP_FVBNJ_P0083385	111 (aa)	-	-
MGP_FVBNJ_T0083391	-	579	-	-	- (aa)	-	-
MGP_FVBNJ_T0083390	-	1875	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0031997	Snrnp70	52	35.000	MGP_FVBNJ_G0015880	Boll	58	32.911
MGP_FVBNJ_G0031997	Snrnp70	70	46.667	MGP_FVBNJ_G0029866	Snrnp35	61	48.649