EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0033231 (Gene tree)
Gene ID: -
Gene Symbol: Zmat4
Alias: 9630048M01Rik
Full Name: zinc finger%2C matrin type 4
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Plus strand
Length: 517425 bases
Position: chr8:20599586-21117010
Accession: 2443497
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0087979	zf-met	PF12874.7	2.8e-27	1	4
MGP_FVBNJ_P0087979	zf-met	PF12874.7	2.8e-27	2	4
MGP_FVBNJ_P0087979	zf-met	PF12874.7	2.8e-27	3	4
MGP_FVBNJ_P0087979	zf-met	PF12874.7	2.8e-27	4	4
MGP_FVBNJ_P0087977	zf-met	PF12874.7	8.8e-13	1	2
MGP_FVBNJ_P0087977	zf-met	PF12874.7	8.8e-13	2	2
MGP_FVBNJ_P0087980	zf-met	PF12874.7	3.1e-06	1	1
MGP_FVBNJ_P0087979	zf-C2H2_jaz	PF12171.8	4.8e-23	1	2
MGP_FVBNJ_P0087979	zf-C2H2_jaz	PF12171.8	4.8e-23	2	2
MGP_FVBNJ_P0087977	zf-C2H2_jaz	PF12171.8	2.5e-09	1	1
MGP_FVBNJ_P0087980	zf-C2H2_jaz	PF12171.8	9.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0087979	-	4182	-	MGP_FVBNJ_P0087979	229 (aa)	-	-
MGP_FVBNJ_T0087978	-	2272	-	MGP_FVBNJ_P0087978	225 (aa)	-	-
MGP_FVBNJ_T0087980	-	454	-	MGP_FVBNJ_P0087980	68 (aa)	-	-
MGP_FVBNJ_T0087977	-	367	XM_006509139	MGP_FVBNJ_P0087977	96 (aa)	XP_006509202	Q8BZ94
MGP_FVBNJ_T0087981	-	348	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_FVBNJ_G0033231's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0033231's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0033231	Zmat4	94	50.549	MGP_FVBNJ_G0020396	Zfp346	75	44.022
MGP_FVBNJ_G0033231	Zmat4	84	35.172	MGP_FVBNJ_G0026929	Zmat3	74	35.172