EuRBPDB

Description

Ensembl ID: MGP_FVBNJ_G0033581 (Gene tree)
Gene ID: -
Gene Symbol: Smarca5
Alias: 4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 5
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Minus strand
Length: 42262 bases
Position: chr8:76819900-76862161
Accession: 1935129
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0089111	ResIII	PF04851.15	9.8e-11	1	1
MGP_FVBNJ_P0089111	DEAD	PF00270.29	3.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0089115	-	334	-	-	- (aa)	-	-
MGP_FVBNJ_T0089114	-	503	-	-	- (aa)	-	-
MGP_FVBNJ_T0089117	-	722	-	-	- (aa)	-	-
MGP_FVBNJ_T0089116	-	699	-	-	- (aa)	-	-
MGP_FVBNJ_T0089111	-	6105	-	MGP_FVBNJ_P0089111	1051 (aa)	-	Q91ZW3
MGP_FVBNJ_T0089113	-	3292	-	-	- (aa)	-	-
MGP_FVBNJ_T0089112	-	4272	-	MGP_FVBNJ_P0089112	1051 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0033581	Smarca5	93	84.280	MGP_FVBNJ_G0035434	Smarca1	93	84.280
MGP_FVBNJ_G0033581	Smarca5	55	42.833	MGP_FVBNJ_G0027432	Chd1l	64	42.568