EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0033602 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39
Alias: 2610307C23Rik|BAT1|DDXL|Ddx39a|URH49
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Plus strand
Length: 13043 bases
Position: chr8:79806345-79819387
Accession: 1915528
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0089168	ResIII	PF04851.15	3e-05	1	1
MGP_FVBNJ_P0089171	ResIII	PF04851.15	3e-05	1	1
MGP_FVBNJ_P0089172	ResIII	PF04851.15	3e-05	1	1
MGP_FVBNJ_P0089168	DEAD	PF00270.29	4.1e-38	1	1
MGP_FVBNJ_P0089171	DEAD	PF00270.29	4.1e-38	1	1
MGP_FVBNJ_P0089172	DEAD	PF00270.29	4.1e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0089173	-	754	-	-	- (aa)	-	-
MGP_FVBNJ_T0089172	-	1794	-	MGP_FVBNJ_P0089172	427 (aa)	-	-
MGP_FVBNJ_T0089171	-	3836	-	MGP_FVBNJ_P0089171	427 (aa)	-	-
MGP_FVBNJ_T0089170	-	1551	-	MGP_FVBNJ_P0089170	208 (aa)	-	-
MGP_FVBNJ_T0089168	-	1656	XM_006531332	MGP_FVBNJ_P0089168	427 (aa)	XP_006531395	Q8VDW0
MGP_FVBNJ_T0089169	-	1927	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_FVBNJ_G0033602's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0033602's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0033602	Ddx39	86	38.108	MGP_FVBNJ_G0022488	Eif4a2	90	38.108
MGP_FVBNJ_G0033602	Ddx39	90	30.637	MGP_FVBNJ_G0033889	Ddx19a	81	30.637
MGP_FVBNJ_G0033602	Ddx39	90	32.061	MGP_FVBNJ_G0033890	Ddx19b	81	32.061
MGP_FVBNJ_G0033602	Ddx39	86	34.761	MGP_FVBNJ_G0019302	Eif4a3	89	34.761
MGP_FVBNJ_G0033602	Ddx39	90	34.074	MGP_FVBNJ_G0027505	Ddx20	50	34.140
MGP_FVBNJ_G0033602	Ddx39	100	90.888	MGP_FVBNJ_G0023433	Ddx39b	100	90.888
MGP_FVBNJ_G0033602	Ddx39	87	33.156	MGP_FVBNJ_G0033461	Ddx49	97	33.333
MGP_FVBNJ_G0033602	Ddx39	90	30.392	MGP_FVBNJ_G0016758	D1Pas1	57	31.565
MGP_FVBNJ_G0033602	Ddx39	85	31.183	MGP_FVBNJ_G0034291	Ddx25	81	31.328
MGP_FVBNJ_G0033602	Ddx39	89	32.620	MGP_FVBNJ_G0031183	Ddx47	90	32.095
MGP_FVBNJ_G0033602	Ddx39	74	34.969	MGP_FVBNJ_G0017849	Ddx56	61	32.051
MGP_FVBNJ_G0033602	Ddx39	90	30.392	MGP_FVBNJ_G0035327	Ddx3x	56	31.565