EuRBPDB

Description

Ensembl ID: MGP_FVBNJ_G0034229 (Gene tree)
Gene ID: -
Gene Symbol: Elavl3
Alias: 2600009P04Rik|Huc|PLE21|mHuC
Full Name: ELAV (embryonic lethal%2C abnormal vision%2C Drosophila)-like 3 (Hu antigen C)
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Minus strand
Length: 37515 bases
Position: chr9:18433086-18470600
Accession: 109157
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0091035	RRM_5	PF13893.6	4.1e-13	1	2
MGP_FVBNJ_P0091035	RRM_5	PF13893.6	4.1e-13	2	2
MGP_FVBNJ_P0091035	RRM_1	PF00076.22	5.3e-64	1	3
MGP_FVBNJ_P0091035	RRM_1	PF00076.22	5.3e-64	2	3
MGP_FVBNJ_P0091035	RRM_1	PF00076.22	5.3e-64	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0091036	-	1440	-	MGP_FVBNJ_P0091036	337 (aa)	-	-
MGP_FVBNJ_T0091035	-	5017	XM_006510021	MGP_FVBNJ_P0091035	367 (aa)	XP_006510084	Q60900

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0034229	Elavl3	50	36.207	MGP_FVBNJ_G0025569	Rbms1	51	33.645
MGP_FVBNJ_G0034229	Elavl3	70	39.506	MGP_FVBNJ_G0024008	Celf4	67	39.744
MGP_FVBNJ_G0034229	Elavl3	90	37.179	MGP_FVBNJ_G0030747	Tia1	98	31.169
MGP_FVBNJ_G0034229	Elavl3	90	66.867	MGP_FVBNJ_G0033102	Elavl1	95	66.265
MGP_FVBNJ_G0034229	Elavl3	92	36.145	MGP_FVBNJ_G0021609	Pabpc1	54	36.145
MGP_FVBNJ_G0034229	Elavl3	80	41.975	MGP_FVBNJ_G0034657	Celf6	57	42.308
MGP_FVBNJ_G0034229	Elavl3	99	80.323	MGP_FVBNJ_G0028357	Elavl4	99	79.893
MGP_FVBNJ_G0034229	Elavl3	92	36.145	MGP_FVBNJ_G0022945	Pabpc6	61	36.145
MGP_FVBNJ_G0034229	Elavl3	71	42.391	MGP_FVBNJ_G0025935	Celf1	57	43.590
MGP_FVBNJ_G0034229	Elavl3	77	38.272	MGP_FVBNJ_G0017395	Celf5	65	38.462
MGP_FVBNJ_G0034229	Elavl3	73	40.741	MGP_FVBNJ_G0025138	Celf2	82	34.667
MGP_FVBNJ_G0034229	Elavl3	62	37.500	MGP_FVBNJ_G0017321	Cirbp	79	37.500
MGP_FVBNJ_G0034229	Elavl3	63	37.931	MGP_FVBNJ_G0035158	Rbms3	70	38.562
MGP_FVBNJ_G0034229	Elavl3	59	30.488	MGP_FVBNJ_G0026632	Pabpc1l	63	38.889
MGP_FVBNJ_G0034229	Elavl3	90	34.940	MGP_FVBNJ_G0024168	Pabpc2	61	34.940
MGP_FVBNJ_G0034229	Elavl3	92	33.735	MGP_FVBNJ_G0028517	Pabpc4	94	31.061
MGP_FVBNJ_G0034229	Elavl3	90	36.145	MGP_FVBNJ_G0026984	Pabpc4l	96	36.145
MGP_FVBNJ_G0034229	Elavl3	89	34.940	MGP_FVBNJ_G0027344	Celf3	98	35.632
MGP_FVBNJ_G0034229	Elavl3	100	78.400	MGP_FVBNJ_G0028225	Elavl2	100	79.292
MGP_FVBNJ_G0034229	Elavl3	69	33.708	MGP_FVBNJ_G0035499	Rbmx	86	33.708
MGP_FVBNJ_G0034229	Elavl3	90	37.179	MGP_FVBNJ_G0032858	Tial1	73	37.179