EuRBPDB

Description

Ensembl ID: MGP_FVBNJ_G0034864 (Gene tree)
Gene ID: -
Gene Symbol: Syncrip
Alias: 2610109K23Rik|4632417O19Rik|GRY-RBP|Hnrpq|Nsap1|Nsap1l|RRM RNA binding protein GRY-RBP|hnRNP Q|pp68
Full Name: synaptotagmin binding%2C cytoplasmic RNA interacting protein
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Minus strand
Length: 37152 bases
Position: chr9:84783209-84820360
Accession: 1891690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0093103	RRM_5	PF13893.6	2.4e-06	1	1
MGP_FVBNJ_P0093106	RRM_5	PF13893.6	3.2e-06	1	1
MGP_FVBNJ_P0093104	RRM_5	PF13893.6	4.7e-06	1	1
MGP_FVBNJ_P0093101	RRM_5	PF13893.6	4.8e-06	1	1
MGP_FVBNJ_P0093107	RRM_5	PF13893.6	6.1e-06	1	1
MGP_FVBNJ_P0093104	RRM_1	PF00076.22	3e-44	1	3
MGP_FVBNJ_P0093104	RRM_1	PF00076.22	3e-44	2	3
MGP_FVBNJ_P0093104	RRM_1	PF00076.22	3e-44	3	3
MGP_FVBNJ_P0093101	RRM_1	PF00076.22	3e-44	1	3
MGP_FVBNJ_P0093101	RRM_1	PF00076.22	3e-44	2	3
MGP_FVBNJ_P0093101	RRM_1	PF00076.22	3e-44	3	3
MGP_FVBNJ_P0093107	RRM_1	PF00076.22	4.6e-44	1	3
MGP_FVBNJ_P0093107	RRM_1	PF00076.22	4.6e-44	2	3
MGP_FVBNJ_P0093107	RRM_1	PF00076.22	4.6e-44	3	3
MGP_FVBNJ_P0093103	RRM_1	PF00076.22	8.3e-43	1	3
MGP_FVBNJ_P0093103	RRM_1	PF00076.22	8.3e-43	2	3
MGP_FVBNJ_P0093103	RRM_1	PF00076.22	8.3e-43	3	3
MGP_FVBNJ_P0093106	RRM_1	PF00076.22	1.3e-42	1	3
MGP_FVBNJ_P0093106	RRM_1	PF00076.22	1.3e-42	2	3
MGP_FVBNJ_P0093106	RRM_1	PF00076.22	1.3e-42	3	3
MGP_FVBNJ_P0093102	RRM_1	PF00076.22	1.4e-31	1	2
MGP_FVBNJ_P0093102	RRM_1	PF00076.22	1.4e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0093110	-	2384	-	-	- (aa)	-	-
MGP_FVBNJ_T0093111	-	473	-	MGP_FVBNJ_P0093111	94 (aa)	-	-
MGP_FVBNJ_T0093105	-	1925	-	MGP_FVBNJ_P0093105	67 (aa)	-	-
MGP_FVBNJ_T0093104	-	3404	-	MGP_FVBNJ_P0093104	561 (aa)	-	-
MGP_FVBNJ_T0093107	-	2391	-	MGP_FVBNJ_P0093107	623 (aa)	-	-
MGP_FVBNJ_T0093106	-	1767	-	MGP_FVBNJ_P0093106	588 (aa)	-	-
MGP_FVBNJ_T0093101	-	9453	XM_006511293	MGP_FVBNJ_P0093101	562 (aa)	XP_006511356	Q7TMK9
MGP_FVBNJ_T0093103	-	3286	-	MGP_FVBNJ_P0093103	527 (aa)	-	-
MGP_FVBNJ_T0093102	-	3173	-	MGP_FVBNJ_P0093102	448 (aa)	-	-
MGP_FVBNJ_T0093109	-	766	-	MGP_FVBNJ_P0093109	196 (aa)	-	-
MGP_FVBNJ_T0093108	-	549	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0034864	Syncrip	58	52.308	MGP_FVBNJ_G0024841	A1cf	52	53.398
MGP_FVBNJ_G0034864	Syncrip	75	57.522	MGP_FVBNJ_G0029362	Rbm47	88	58.451
MGP_FVBNJ_G0034864	Syncrip	94	80.263	MGP_FVBNJ_G0028743	Hnrnpr	99	81.716
MGP_FVBNJ_G0034864	Syncrip	53	54.333	MGP_FVBNJ_G0027125	Rbm46	63	55.000