EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0034992 (Gene tree)
Gene ID: -
Gene Symbol: Pcbp4
Alias: 1200003L19Rik|AlphaCP-4
Full Name: poly(rC) binding protein 4
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Plus strand
Length: 11314 bases
Position: chr9:102590846-102602159
Accession: 1890471
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0093708	KH_1	PF00013.29	3.3e-50	1	3
MGP_FVBNJ_P0093708	KH_1	PF00013.29	3.3e-50	2	3
MGP_FVBNJ_P0093708	KH_1	PF00013.29	3.3e-50	3	3
MGP_FVBNJ_P0093707	KH_1	PF00013.29	2.7e-32	1	2
MGP_FVBNJ_P0093707	KH_1	PF00013.29	2.7e-32	2	2
MGP_FVBNJ_P0093713	KH_1	PF00013.29	1.5e-21	1	1
MGP_FVBNJ_P0093704	KH_1	PF00013.29	1.3e-18	1	1
MGP_FVBNJ_P0093706	KH_1	PF00013.29	2.3e-15	1	1
MGP_FVBNJ_P0093710	KH_1	PF00013.29	1.2e-13	1	1
MGP_FVBNJ_P0093715	KH_1	PF00013.29	5.3e-09	1	1
MGP_FVBNJ_P0093707	KH_2	PF07650.17	8.2e-12	1	1
MGP_FVBNJ_P0093704	KH_2	PF07650.17	2.3e-06	1	1
MGP_FVBNJ_P0093706	KH_2	PF07650.17	0.00014	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0093707	-	818	-	MGP_FVBNJ_P0093707	197 (aa)	-	-
MGP_FVBNJ_T0093706	-	752	-	MGP_FVBNJ_P0093706	113 (aa)	-	-
MGP_FVBNJ_T0093705	-	477	-	-	- (aa)	-	-
MGP_FVBNJ_T0093704	-	553	XM_006511779	MGP_FVBNJ_P0093704	119 (aa)	XP_006511842	A0A087WP16
MGP_FVBNJ_T0093709	-	253	-	-	- (aa)	-	-
MGP_FVBNJ_T0093708	-	1869	-	MGP_FVBNJ_P0093708	403 (aa)	-	-
MGP_FVBNJ_T0093714	-	314	-	-	- (aa)	-	-
MGP_FVBNJ_T0093715	-	924	-	MGP_FVBNJ_P0093715	215 (aa)	-	-
MGP_FVBNJ_T0093716	-	450	-	-	- (aa)	-	-
MGP_FVBNJ_T0093710	-	232	-	MGP_FVBNJ_P0093710	77 (aa)	-	-
MGP_FVBNJ_T0093711	-	846	-	MGP_FVBNJ_P0093711	150 (aa)	-	-
MGP_FVBNJ_T0093712	-	289	-	-	- (aa)	-	-
MGP_FVBNJ_T0093713	-	770	-	MGP_FVBNJ_P0093713	168 (aa)	-	-

Gene Model

Click here to download MGP_FVBNJ_G0034992's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0034992's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0034992	Pcbp4	51	37.363	MGP_FVBNJ_G0019534	Nova1	52	37.363
MGP_FVBNJ_G0034992	Pcbp4	86	33.728	MGP_FVBNJ_G0020444	Hnrnpk	78	32.414
MGP_FVBNJ_G0034992	Pcbp4	84	32.039	MGP_FVBNJ_G0018816	Igf2bp1	59	30.597
MGP_FVBNJ_G0034992	Pcbp4	83	36.000	MGP_FVBNJ_G0025394	Fubp3	70	36.000
MGP_FVBNJ_G0034992	Pcbp4	93	70.652	MGP_FVBNJ_G0017220	Pcbp3	85	69.811
MGP_FVBNJ_G0034992	Pcbp4	86	31.551	MGP_FVBNJ_G0032230	-	77	31.551
MGP_FVBNJ_G0034992	Pcbp4	97	67.826	MGP_FVBNJ_G0030750	Pcbp1	98	53.541
MGP_FVBNJ_G0034992	Pcbp4	76	33.684	MGP_FVBNJ_G0027771	Fubp1	72	34.524
MGP_FVBNJ_G0034992	Pcbp4	76	32.323	MGP_FVBNJ_G0023742	Khsrp	54	34.091
MGP_FVBNJ_G0034992	Pcbp4	98	66.321	MGP_FVBNJ_G0022224	Pcbp2	97	59.877
MGP_FVBNJ_G0034992	Pcbp4	76	41.538	MGP_FVBNJ_G0031520	-	51	41.538
MGP_FVBNJ_G0034992	Pcbp4	76	41.538	MGP_FVBNJ_G0031521	Nova2	54	41.538
MGP_FVBNJ_G0034992	Pcbp4	85	31.731	MGP_FVBNJ_G0022476	Igf2bp2	62	31.111