EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0035158 (Gene tree)
Gene ID: -
Gene Symbol: Rbms3
Alias: 6720477E09Rik|8430436O14Rik
Full Name: RNA binding motif%2C single stranded interacting protein
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Minus strand
Length: 1061398 bases
Position: chr9:113056541-114117938
Accession: 2444477
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0094681	RRM_1	PF00076.22	1.5e-32	1	2
MGP_FVBNJ_P0094681	RRM_1	PF00076.22	1.5e-32	2	2
MGP_FVBNJ_P0094678	RRM_1	PF00076.22	1.2e-31	1	2
MGP_FVBNJ_P0094678	RRM_1	PF00076.22	1.2e-31	2	2
MGP_FVBNJ_P0094675	RRM_1	PF00076.22	1.4e-31	1	2
MGP_FVBNJ_P0094675	RRM_1	PF00076.22	1.4e-31	2	2
MGP_FVBNJ_P0094673	RRM_1	PF00076.22	1.5e-31	1	2
MGP_FVBNJ_P0094673	RRM_1	PF00076.22	1.5e-31	2	2
MGP_FVBNJ_P0094677	RRM_1	PF00076.22	1.5e-31	1	2
MGP_FVBNJ_P0094677	RRM_1	PF00076.22	1.5e-31	2	2
MGP_FVBNJ_P0094672	RRM_1	PF00076.22	1.7e-31	1	2
MGP_FVBNJ_P0094672	RRM_1	PF00076.22	1.7e-31	2	2
MGP_FVBNJ_P0094676	RRM_1	PF00076.22	2e-31	1	2
MGP_FVBNJ_P0094676	RRM_1	PF00076.22	2e-31	2	2
MGP_FVBNJ_P0094679	RRM_1	PF00076.22	2.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0094683	-	1753	-	-	- (aa)	-	-
MGP_FVBNJ_T0094682	-	1438	-	-	- (aa)	-	-
MGP_FVBNJ_T0094681	-	619	-	MGP_FVBNJ_P0094681	206 (aa)	-	-
MGP_FVBNJ_T0094680	-	2027	-	-	- (aa)	-	-
MGP_FVBNJ_T0094678	-	1984	-	MGP_FVBNJ_P0094678	386 (aa)	-	-
MGP_FVBNJ_T0094679	-	585	-	MGP_FVBNJ_P0094679	194 (aa)	-	-
MGP_FVBNJ_T0094676	-	2128	-	MGP_FVBNJ_P0094676	463 (aa)	-	-
MGP_FVBNJ_T0094677	-	2236	-	MGP_FVBNJ_P0094677	415 (aa)	-	-
MGP_FVBNJ_T0094674	-	1625	-	MGP_FVBNJ_P0094674	185 (aa)	-	-
MGP_FVBNJ_T0094675	-	2166	-	MGP_FVBNJ_P0094675	402 (aa)	-	-
MGP_FVBNJ_T0094672	-	7905	XM_017313248	MGP_FVBNJ_P0094672	431 (aa)	XP_017168737	Q8BWL5
MGP_FVBNJ_T0094673	-	3314	-	MGP_FVBNJ_P0094673	414 (aa)	-	-

Gene Model

Click here to download MGP_FVBNJ_G0035158's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0035158's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0035158	Rbms3	70	38.562	MGP_FVBNJ_G0034229	Elavl3	63	37.931
MGP_FVBNJ_G0035158	Rbms3	75	37.079	MGP_FVBNJ_G0025138	Celf2	77	39.474
MGP_FVBNJ_G0035158	Rbms3	72	40.789	MGP_FVBNJ_G0024008	Celf4	68	40.789
MGP_FVBNJ_G0035158	Rbms3	93	36.134	MGP_FVBNJ_G0017395	Celf5	57	42.105
MGP_FVBNJ_G0035158	Rbms3	99	80.841	MGP_FVBNJ_G0025569	Rbms1	96	71.538
MGP_FVBNJ_G0035158	Rbms3	83	37.222	MGP_FVBNJ_G0028225	Elavl2	69	37.209
MGP_FVBNJ_G0035158	Rbms3	83	37.097	MGP_FVBNJ_G0028357	Elavl4	70	36.458
MGP_FVBNJ_G0035158	Rbms3	83	80.663	MGP_FVBNJ_G0017682	Rbms2	86	66.758
MGP_FVBNJ_G0035158	Rbms3	77	30.818	MGP_FVBNJ_G0026632	Pabpc1l	59	30.818
MGP_FVBNJ_G0035158	Rbms3	82	42.105	MGP_FVBNJ_G0034657	Celf6	52	42.105
MGP_FVBNJ_G0035158	Rbms3	97	34.356	MGP_FVBNJ_G0033102	Elavl1	91	34.356
MGP_FVBNJ_G0035158	Rbms3	77	33.708	MGP_FVBNJ_G0022945	Pabpc6	59	34.091
MGP_FVBNJ_G0035158	Rbms3	68	43.421	MGP_FVBNJ_G0025935	Celf1	53	43.421
MGP_FVBNJ_G0035158	Rbms3	81	39.474	MGP_FVBNJ_G0027344	Celf3	94	40.278