EuRBPDB

Description

Ensembl ID: MGP_FVBNJ_G0035434 (Gene tree)
Gene ID: -
Gene Symbol: Smarca1
Alias: 5730494M04Rik|Snf2l
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Minus strand
Length: 74916 bases
Position: chrX:42374820-42449735
Accession: 1935127
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0095545	ResIII	PF04851.15	4.3e-12	1	1
MGP_FVBNJ_P0095544	ResIII	PF04851.15	1.1e-11	1	1
MGP_FVBNJ_P0095542	ResIII	PF04851.15	1.8e-11	1	1
MGP_FVBNJ_P0095541	ResIII	PF04851.15	1.8e-11	1	1
MGP_FVBNJ_P0095543	ResIII	PF04851.15	1.8e-11	1	1
MGP_FVBNJ_P0095541	DEAD	PF00270.29	1.2e-06	1	1
MGP_FVBNJ_P0095543	DEAD	PF00270.29	1.2e-06	1	1
MGP_FVBNJ_P0095542	DEAD	PF00270.29	1.3e-06	1	1
MGP_FVBNJ_P0095545	DEAD	PF00270.29	2.4e-06	1	1
MGP_FVBNJ_P0095544	DEAD	PF00270.29	3.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0095547	-	409	-	-	- (aa)	-	-
MGP_FVBNJ_T0095546	-	360	-	MGP_FVBNJ_P0095546	117 (aa)	-	-
MGP_FVBNJ_T0095545	-	1965	-	MGP_FVBNJ_P0095545	381 (aa)	-	-
MGP_FVBNJ_T0095544	-	2304	-	MGP_FVBNJ_P0095544	768 (aa)	-	-
MGP_FVBNJ_T0095543	-	4798	-	MGP_FVBNJ_P0095543	1046 (aa)	-	-
MGP_FVBNJ_T0095542	-	3991	-	MGP_FVBNJ_P0095542	1062 (aa)	-	-
MGP_FVBNJ_T0095541	-	4024	XM_006541563	MGP_FVBNJ_P0095541	1046 (aa)	XP_006541626	Q6PGB8

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0035434	Smarca1	93	84.280	MGP_FVBNJ_G0033581	Smarca5	93	84.280
MGP_FVBNJ_G0035434	Smarca1	68	31.661	MGP_FVBNJ_G0027835	Rad54b	62	32.212
MGP_FVBNJ_G0035434	Smarca1	71	30.490	MGP_FVBNJ_G0020482	Ercc6l2	82	30.353
MGP_FVBNJ_G0035434	Smarca1	75	42.930	MGP_FVBNJ_G0027432	Chd1l	62	43.826
MGP_FVBNJ_G0035434	Smarca1	61	32.031	MGP_FVBNJ_G0028397	Rad54l	66	33.267
MGP_FVBNJ_G0035434	Smarca1	72	45.247	MGP_FVBNJ_G0024899	Hells	65	47.410