EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_FVBNJ_G0035793 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc5
Alias: C820015E17
Full Name: poly(A) binding protein%2C cytoplasmic 5
Gene Type: protein_coding
Species: Mus_musculus_fvbnj
Status: putative
Strand: Plus strand
Length: 2971 bases
Position: chrX:115074836-115077806
Accession: 2136401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_FVBNJ_P0096829	RRM_5	PF13893.6	7.2e-12	1	2
MGP_FVBNJ_P0096829	RRM_5	PF13893.6	7.2e-12	2	2
MGP_FVBNJ_P0096830	RRM_5	PF13893.6	7.2e-12	1	2
MGP_FVBNJ_P0096830	RRM_5	PF13893.6	7.2e-12	2	2
MGP_FVBNJ_P0096829	RRM_1	PF00076.22	1.1e-77	1	4
MGP_FVBNJ_P0096829	RRM_1	PF00076.22	1.1e-77	2	4
MGP_FVBNJ_P0096829	RRM_1	PF00076.22	1.1e-77	3	4
MGP_FVBNJ_P0096829	RRM_1	PF00076.22	1.1e-77	4	4
MGP_FVBNJ_P0096830	RRM_1	PF00076.22	1.1e-77	1	4
MGP_FVBNJ_P0096830	RRM_1	PF00076.22	1.1e-77	2	4
MGP_FVBNJ_P0096830	RRM_1	PF00076.22	1.1e-77	3	4
MGP_FVBNJ_P0096830	RRM_1	PF00076.22	1.1e-77	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_FVBNJ_T0096829	-	2435	-	MGP_FVBNJ_P0096829	381 (aa)	-	Q8C7D3
MGP_FVBNJ_T0096830	-	2244	-	MGP_FVBNJ_P0096830	381 (aa)	-	-

Gene Model

Click here to download MGP_FVBNJ_G0035793's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_FVBNJ_G0035793's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_FVBNJ_G0035793	Pabpc5	70	35.955	MGP_FVBNJ_G0017395	Celf5	56	35.955
MGP_FVBNJ_G0035793	Pabpc5	96	61.111	MGP_FVBNJ_G0024168	Pabpc2	62	60.955
MGP_FVBNJ_G0035793	Pabpc5	94	37.037	MGP_FVBNJ_G0028225	Elavl2	89	37.037
MGP_FVBNJ_G0035793	Pabpc5	95	58.445	MGP_FVBNJ_G0022945	Pabpc6	59	58.470
MGP_FVBNJ_G0035793	Pabpc5	95	64.187	MGP_FVBNJ_G0028517	Pabpc4	100	68.841
MGP_FVBNJ_G0035793	Pabpc5	63	34.483	MGP_FVBNJ_G0034657	Celf6	51	34.483
MGP_FVBNJ_G0035793	Pabpc5	96	56.944	MGP_FVBNJ_G0026632	Pabpc1l	64	57.022
MGP_FVBNJ_G0035793	Pabpc5	93	33.333	MGP_FVBNJ_G0030747	Tia1	84	34.247
MGP_FVBNJ_G0035793	Pabpc5	96	57.967	MGP_FVBNJ_G0026984	Pabpc4l	97	57.865
MGP_FVBNJ_G0035793	Pabpc5	96	65.043	MGP_FVBNJ_G0021609	Pabpc1	54	65.205