EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_LPJ_G0017301 (Gene tree)
Gene ID: -
Gene Symbol: Pcbp3
Alias: AlphaCP-3
Full Name: poly(rC) binding protein 3
Gene Type: protein_coding
Species: Mus_musculus_lpj
Status: putative
Strand: Minus strand
Length: 208994 bases
Position: chr10:77502667-77711660
Accession: 1890470
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_LPJ_P0025773	KH_1	PF00013.29	2.9e-55	1	3
MGP_LPJ_P0025773	KH_1	PF00013.29	2.9e-55	2	3
MGP_LPJ_P0025773	KH_1	PF00013.29	2.9e-55	3	3
MGP_LPJ_P0025770	KH_1	PF00013.29	3e-55	1	3
MGP_LPJ_P0025770	KH_1	PF00013.29	3e-55	2	3
MGP_LPJ_P0025770	KH_1	PF00013.29	3e-55	3	3
MGP_LPJ_P0025772	KH_1	PF00013.29	3e-55	1	3
MGP_LPJ_P0025772	KH_1	PF00013.29	3e-55	2	3
MGP_LPJ_P0025772	KH_1	PF00013.29	3e-55	3	3
MGP_LPJ_P0025775	KH_1	PF00013.29	7.7e-19	1	1
MGP_LPJ_P0025773	KH_2	PF07650.17	3.9e-15	1	1
MGP_LPJ_P0025770	KH_2	PF07650.17	3.9e-15	1	1
MGP_LPJ_P0025772	KH_2	PF07650.17	3.9e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_LPJ_T0025769	-	2364	XM_006513916	MGP_LPJ_P0025769	394 (aa)	XP_006513979	P57722
MGP_LPJ_T0025778	-	337	-	-	- (aa)	-	-
MGP_LPJ_T0025775	-	605	-	MGP_LPJ_P0025775	160 (aa)	-	-
MGP_LPJ_T0025774	-	1095	-	-	- (aa)	-	-
MGP_LPJ_T0025777	-	717	-	-	- (aa)	-	-
MGP_LPJ_T0025776	-	944	-	MGP_LPJ_P0025776	226 (aa)	-	-
MGP_LPJ_T0025771	-	1736	-	-	- (aa)	-	-
MGP_LPJ_T0025770	-	2013	-	MGP_LPJ_P0025770	371 (aa)	-	-
MGP_LPJ_T0025773	-	2544	-	MGP_LPJ_P0025773	370 (aa)	-	-
MGP_LPJ_T0025772	-	1748	-	MGP_LPJ_P0025772	371 (aa)	-	-

Gene Model

Click here to download MGP_LPJ_G0017301's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_LPJ_G0017301's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_LPJ_G0017301	Pcbp3	72	40.351	MGP_LPJ_G0019615	Nova1	59	40.351
MGP_LPJ_G0017301	Pcbp3	81	41.667	MGP_LPJ_G0020541	Hnrnpk	70	51.316
MGP_LPJ_G0017301	Pcbp3	66	31.250	MGP_LPJ_G0027915	Fubp1	72	33.019
MGP_LPJ_G0017301	Pcbp3	99	82.143	MGP_LPJ_G0022317	Pcbp2	99	78.338
MGP_LPJ_G0017301	Pcbp3	99	65.873	MGP_LPJ_G0030874	Pcbp1	99	68.033
MGP_LPJ_G0017301	Pcbp3	85	31.973	MGP_LPJ_G0025517	Fubp3	77	31.973
MGP_LPJ_G0017301	Pcbp3	66	33.582	MGP_LPJ_G0018897	Igf2bp1	60	33.333
MGP_LPJ_G0017301	Pcbp3	86	35.000	MGP_LPJ_G0030624	Igf2bp3	59	33.813
MGP_LPJ_G0017301	Pcbp3	85	69.811	MGP_LPJ_G0035120	-	93	70.652
MGP_LPJ_G0017301	Pcbp3	89	36.765	MGP_LPJ_G0022568	Igf2bp2	62	33.333