EuRBPDB

Description

Ensembl ID: MGP_LPJ_G0018178 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpab
Alias: 3010025C11Rik|CBF-A|Cbf-a|Cgbfa|Hnrpab|Hnrpab {ECO:0000313|EMBL:EDL33661.1,GN ECO:0000313|MGI:MGI:1330294}|Hnrpab {ECO:0000313|EMBL:EDL33663.1,GN ECO:0000313|MGI:MGI:1330294}
Full Name: heterogeneous nuclear ribonucleoprotein A/B
Gene Type: protein_coding
Species: Mus_musculus_lpj
Status: putative
Strand: Minus strand
Length: 6740 bases
Position: chr11:51272434-51279173
Accession: 1330294
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_LPJ_P0028856	CBFNT	PF08143.11	3.2e-19	1	1
MGP_LPJ_P0028857	CBFNT	PF08143.11	3.7e-19	1	1
MGP_LPJ_P0028858	CBFNT	PF08143.11	4.2e-19	1	1
MGP_LPJ_P0028856	RRM_1	PF00076.22	6.4e-34	1	2
MGP_LPJ_P0028856	RRM_1	PF00076.22	6.4e-34	2	2
MGP_LPJ_P0028857	RRM_1	PF00076.22	8.5e-34	1	2
MGP_LPJ_P0028857	RRM_1	PF00076.22	8.5e-34	2	2
MGP_LPJ_P0028858	RRM_1	PF00076.22	1e-33	1	2
MGP_LPJ_P0028858	RRM_1	PF00076.22	1e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_LPJ_T0028857	-	2013	-	MGP_LPJ_P0028857	311 (aa)	-	-
MGP_LPJ_T0028856	-	2370	-	MGP_LPJ_P0028856	285 (aa)	-	Q99020
MGP_LPJ_T0028858	-	1437	-	MGP_LPJ_P0028858	332 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_LPJ_G0018178	Hnrnpab	67	40.351	MGP_LPJ_G0017404	Dazap1	99	40.588
MGP_LPJ_G0018178	Hnrnpab	53	33.333	MGP_LPJ_G0033249	Elavl1	50	33.333
MGP_LPJ_G0018178	Hnrnpab	61	36.723	MGP_LPJ_G0022337	Hnrnpa1	63	33.333
MGP_LPJ_G0018178	Hnrnpab	82	58.419	MGP_LPJ_G0029683	Hnrnpdl	89	57.292
MGP_LPJ_G0018178	Hnrnpab	77	70.183	MGP_LPJ_G0029681	Hnrnpd	97	70.616
MGP_LPJ_G0018178	Hnrnpab	79	40.800	MGP_LPJ_G0029870	Msi1	58	48.052
MGP_LPJ_G0018178	Hnrnpab	70	48.039	MGP_LPJ_G0018828	Msi2	100	52.212
MGP_LPJ_G0018178	Hnrnpab	64	37.368	MGP_LPJ_G0030637	Hnrnpa2b1	61	38.068
MGP_LPJ_G0018178	Hnrnpab	82	32.099	MGP_LPJ_G0029032	Tardbp	60	33.333
MGP_LPJ_G0018178	Hnrnpab	65	31.414	MGP_LPJ_G0034798	Celf6	66	32.500
MGP_LPJ_G0018178	Hnrnpab	51	33.846	MGP_LPJ_G0019890	Slirp	73	33.846
MGP_LPJ_G0018178	Hnrnpab	57	35.882	MGP_LPJ_G0020535	Hnrnpa0	58	35.882