EuRBPDB

Description

Ensembl ID: MGP_LPJ_G0020541 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpk
Alias: Hnrpk|Hnrpk {ECO:0000313|EMBL:AAH89328.1,GN ECO:0000313|MGI:MGI:99894}|KBBP|NOVA|hnRNPK
Full Name: heterogeneous nuclear ribonucleoprotein K
Gene Type: protein_coding
Species: Mus_musculus_lpj
Status: putative
Strand: Minus strand
Length: 14035 bases
Position: chr13:58301255-58315289
Accession: 99894
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_LPJ_P0037173	KH_1	PF00013.29	2.4e-43	1	3
MGP_LPJ_P0037173	KH_1	PF00013.29	2.4e-43	2	3
MGP_LPJ_P0037173	KH_1	PF00013.29	2.4e-43	3	3
MGP_LPJ_P0037176	KH_1	PF00013.29	2.4e-43	1	3
MGP_LPJ_P0037176	KH_1	PF00013.29	2.4e-43	2	3
MGP_LPJ_P0037176	KH_1	PF00013.29	2.4e-43	3	3
MGP_LPJ_P0037171	KH_1	PF00013.29	3e-43	1	3
MGP_LPJ_P0037171	KH_1	PF00013.29	3e-43	2	3
MGP_LPJ_P0037171	KH_1	PF00013.29	3e-43	3	3
MGP_LPJ_P0037174	KH_1	PF00013.29	3e-43	1	3
MGP_LPJ_P0037174	KH_1	PF00013.29	3e-43	2	3
MGP_LPJ_P0037174	KH_1	PF00013.29	3e-43	3	3
MGP_LPJ_P0037175	KH_1	PF00013.29	2.3e-33	1	2
MGP_LPJ_P0037175	KH_1	PF00013.29	2.3e-33	2	2
MGP_LPJ_P0037180	KH_1	PF00013.29	1.1e-23	1	2
MGP_LPJ_P0037180	KH_1	PF00013.29	1.1e-23	2	2
MGP_LPJ_P0037177	KH_1	PF00013.29	1.6e-23	1	2
MGP_LPJ_P0037177	KH_1	PF00013.29	1.6e-23	2	2
MGP_LPJ_P0037183	KH_1	PF00013.29	2.9e-23	1	2
MGP_LPJ_P0037183	KH_1	PF00013.29	2.9e-23	2	2
MGP_LPJ_P0037185	KH_1	PF00013.29	3.3e-09	1	1
MGP_LPJ_P0037187	KH_1	PF00013.29	6.6e-09	1	1
MGP_LPJ_P0037182	KH_1	PF00013.29	3.4e-05	1	1
MGP_LPJ_P0037187	KH_2	PF07650.17	0.00011	1	1
MGP_LPJ_P0037182	KH_2	PF07650.17	0.00023	1	1
MGP_LPJ_P0037182	ROKNT	PF08067.11	2e-27	1	1
MGP_LPJ_P0037177	ROKNT	PF08067.11	3e-27	1	1
MGP_LPJ_P0037187	ROKNT	PF08067.11	3.6e-27	1	1
MGP_LPJ_P0037173	ROKNT	PF08067.11	7.8e-27	1	1
MGP_LPJ_P0037176	ROKNT	PF08067.11	7.8e-27	1	1
MGP_LPJ_P0037180	ROKNT	PF08067.11	1.9e-26	1	1
MGP_LPJ_P0037171	ROKNT	PF08067.11	4e-26	1	1
MGP_LPJ_P0037174	ROKNT	PF08067.11	4e-26	1	1
MGP_LPJ_P0037183	ROKNT	PF08067.11	1.9e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_LPJ_T0037171	-	2665	XM_006517103	MGP_LPJ_P0037171	464 (aa)	XP_006517166	P61979
MGP_LPJ_T0037172	-	2903	-	MGP_LPJ_P0037172	521 (aa)	-	-
MGP_LPJ_T0037173	-	2321	-	MGP_LPJ_P0037173	440 (aa)	-	-
MGP_LPJ_T0037174	-	2431	-	MGP_LPJ_P0037174	464 (aa)	-	-
MGP_LPJ_T0037175	-	2340	-	MGP_LPJ_P0037175	395 (aa)	-	-
MGP_LPJ_T0037176	-	2408	-	MGP_LPJ_P0037176	440 (aa)	-	-
MGP_LPJ_T0037177	-	1004	-	MGP_LPJ_P0037177	299 (aa)	-	-
MGP_LPJ_T0037178	-	522	-	-	- (aa)	-	-
MGP_LPJ_T0037179	-	737	-	-	- (aa)	-	-
MGP_LPJ_T0037187	-	1053	-	MGP_LPJ_P0037187	97 (aa)	-	-
MGP_LPJ_T0037186	-	775	-	-	- (aa)	-	-
MGP_LPJ_T0037181	-	459	-	-	- (aa)	-	-
MGP_LPJ_T0037180	-	900	-	MGP_LPJ_P0037180	256 (aa)	-	-
MGP_LPJ_T0037183	-	676	-	MGP_LPJ_P0037183	178 (aa)	-	-
MGP_LPJ_T0037182	-	723	-	MGP_LPJ_P0037182	77 (aa)	-	-
MGP_LPJ_T0037185	-	476	-	MGP_LPJ_P0037185	87 (aa)	-	-
MGP_LPJ_T0037184	-	833	-	-	- (aa)	-	-
MGP_LPJ_T0037188	-	783	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_LPJ_G0020541	Hnrnpk	62	37.681	MGP_LPJ_G0031651	-	51	38.235
MGP_LPJ_G0020541	Hnrnpk	62	38.235	MGP_LPJ_G0031652	-	54	37.681
MGP_LPJ_G0020541	Hnrnpk	78	32.414	MGP_LPJ_G0035120	-	86	34.706
MGP_LPJ_G0020541	Hnrnpk	90	31.613	MGP_LPJ_G0022317	Pcbp2	85	44.444
MGP_LPJ_G0020541	Hnrnpk	93	98.739	MGP_LPJ_G0032357	-	99	98.739
MGP_LPJ_G0020541	Hnrnpk	89	31.613	MGP_LPJ_G0030874	Pcbp1	87	42.857
MGP_LPJ_G0020541	Hnrnpk	57	35.897	MGP_LPJ_G0025517	Fubp3	71	35.897
MGP_LPJ_G0020541	Hnrnpk	70	51.316	MGP_LPJ_G0017301	Pcbp3	81	41.667
MGP_LPJ_G0020541	Hnrnpk	56	39.062	MGP_LPJ_G0019615	Nova1	56	39.062
MGP_LPJ_G0020541	Hnrnpk	63	34.615	MGP_LPJ_G0027915	Fubp1	73	34.615