EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_LPJ_G0021234 (Gene tree)
Gene ID: -
Gene Symbol: Pabpn1
Alias: PAB2|Pab2|Pabp2|Pabp3|mPABII|poly(A) binding protein II
Full Name: poly(A) binding protein%2C nuclear 1
Gene Type: protein_coding
Species: Mus_musculus_lpj
Status: putative
Strand: Plus strand
Length: 6891 bases
Position: chr14:49894430-49901320
Accession: 1859158
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_LPJ_P0039327	RRM_1	PF00076.22	3.8e-15	1	1
MGP_LPJ_P0039332	RRM_1	PF00076.22	4.8e-15	1	1
MGP_LPJ_P0039331	RRM_1	PF00076.22	1.3e-14	1	1
MGP_LPJ_P0039328	RRM_1	PF00076.22	1.4e-14	1	1
MGP_LPJ_P0039329	RRM_1	PF00076.22	1.5e-14	1	1
MGP_LPJ_P0039333	RRM_1	PF00076.22	8.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_LPJ_T0039329	-	1777	-	MGP_LPJ_P0039329	319 (aa)	-	-
MGP_LPJ_T0039328	-	1030	-	MGP_LPJ_P0039328	302 (aa)	-	-
MGP_LPJ_T0039327	-	680	XM_006519272	MGP_LPJ_P0039327	164 (aa)	XP_006519335	Q8CCS6
MGP_LPJ_T0039330	-	826	-	MGP_LPJ_P0039330	73 (aa)	-	-
MGP_LPJ_T0039331	-	2528	-	MGP_LPJ_P0039331	292 (aa)	-	-
MGP_LPJ_T0039332	-	700	-	MGP_LPJ_P0039332	178 (aa)	-	-
MGP_LPJ_T0039333	-	939	-	MGP_LPJ_P0039333	42 (aa)	-	-

Gene Model

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Protein-Protein Interaction (PPI)

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Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_LPJ_G0021234	Pabpn1	100	100.000	MGP_LPJ_G0021233	Gm20521	57	100.000
MGP_LPJ_G0021234	Pabpn1	93	61.538	MGP_LPJ_G0034138	Pabpn1l	51	55.102