EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_LPJ_G0021700 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1
Alias: PABP|Pabp1|PabpI|Pabpl1|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1
Gene Type: protein_coding
Species: Mus_musculus_lpj
Status: putative
Strand: Minus strand
Length: 13180 bases
Position: chr15:34903403-34916582
Accession: 1349722
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_LPJ_P0040639	PABP	PF00658.18	8.8e-33	1	1
MGP_LPJ_P0040638	PABP	PF00658.18	7.5e-32	1	1
MGP_LPJ_P0040638	RRM_5	PF13893.6	2.4e-08	1	2
MGP_LPJ_P0040638	RRM_5	PF13893.6	2.4e-08	2	2
MGP_LPJ_P0040638	RRM_1	PF00076.22	1.4e-90	1	4
MGP_LPJ_P0040638	RRM_1	PF00076.22	1.4e-90	2	4
MGP_LPJ_P0040638	RRM_1	PF00076.22	1.4e-90	3	4
MGP_LPJ_P0040638	RRM_1	PF00076.22	1.4e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_LPJ_T0040639	-	593	-	MGP_LPJ_P0040639	117 (aa)	-	-
MGP_LPJ_T0040638	-	2818	XM_011245339	MGP_LPJ_P0040638	636 (aa)	XP_011243641	P29341
MGP_LPJ_T0040644	-	2769	-	-	- (aa)	-	-
MGP_LPJ_T0040640	-	725	-	-	- (aa)	-	-
MGP_LPJ_T0040641	-	632	-	-	- (aa)	-	-
MGP_LPJ_T0040642	-	866	-	-	- (aa)	-	-
MGP_LPJ_T0040643	-	747	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_LPJ_G0021700's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_LPJ_G0021700's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_LPJ_G0021700	Pabpc1	58	64.607	MGP_LPJ_G0035943	Pabpc5	95	64.463
MGP_LPJ_G0021700	Pabpc1	100	80.346	MGP_LPJ_G0024286	Pabpc2	100	80.346
MGP_LPJ_G0021700	Pabpc1	56	34.783	MGP_LPJ_G0032999	Tial1	94	31.008
MGP_LPJ_G0021700	Pabpc1	58	37.349	MGP_LPJ_G0028358	Elavl2	89	37.349
MGP_LPJ_G0021700	Pabpc1	51	34.884	MGP_LPJ_G0025262	Celf2	57	35.714
MGP_LPJ_G0021700	Pabpc1	59	67.493	MGP_LPJ_G0027128	Pabpc4l	97	69.277
MGP_LPJ_G0021700	Pabpc1	57	32.450	MGP_LPJ_G0033249	Elavl1	95	32.450
MGP_LPJ_G0021700	Pabpc1	98	61.635	MGP_LPJ_G0026769	Pabpc1l	99	61.478
MGP_LPJ_G0021700	Pabpc1	52	39.759	MGP_LPJ_G0017472	Celf5	71	39.759
MGP_LPJ_G0021700	Pabpc1	79	79.808	MGP_LPJ_G0026972	-	82	55.702
MGP_LPJ_G0021700	Pabpc1	58	34.667	MGP_LPJ_G0029901	Rbm19	62	34.667
MGP_LPJ_G0021700	Pabpc1	58	36.145	MGP_LPJ_G0034372	Elavl3	92	36.145
MGP_LPJ_G0021700	Pabpc1	57	38.095	MGP_LPJ_G0030871	Tia1	87	38.095
MGP_LPJ_G0021700	Pabpc1	58	36.145	MGP_LPJ_G0028490	Elavl4	88	36.145
MGP_LPJ_G0021700	Pabpc1	99	80.186	MGP_LPJ_G0023047	Pabpc6	99	80.341