EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_LPJ_G0023543 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39b
Alias: 0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh|Uap56
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Gene Type: protein_coding
Species: Mus_musculus_lpj
Status: putative
Strand: Plus strand
Length: 12900 bases
Position: chr17:35722550-35735449
Accession: 99240
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_LPJ_P0047223	ResIII	PF04851.15	1.5e-07	1	1
MGP_LPJ_P0047224	ResIII	PF04851.15	2.3e-07	1	1
MGP_LPJ_P0047226	ResIII	PF04851.15	2.3e-07	1	1
MGP_LPJ_P0047228	ResIII	PF04851.15	2.3e-07	1	1
MGP_LPJ_P0047223	DEAD	PF00270.29	8e-39	1	1
MGP_LPJ_P0047224	DEAD	PF00270.29	1.2e-38	1	1
MGP_LPJ_P0047226	DEAD	PF00270.29	1.2e-38	1	1
MGP_LPJ_P0047228	DEAD	PF00270.29	1.2e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_LPJ_T0047228	-	1770	-	MGP_LPJ_P0047228	428 (aa)	-	-
MGP_LPJ_T0047227	-	740	-	-	- (aa)	-	-
MGP_LPJ_T0047226	-	2848	-	MGP_LPJ_P0047226	428 (aa)	-	-
MGP_LPJ_T0047225	-	1711	-	-	- (aa)	-	-
MGP_LPJ_T0047224	-	1739	-	MGP_LPJ_P0047224	428 (aa)	-	-
MGP_LPJ_T0047223	-	1215	-	MGP_LPJ_P0047223	324 (aa)	-	Q9Z1N5

Gene Model

Click here to download MGP_LPJ_G0023543's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_LPJ_G0023543's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_LPJ_G0023543	Ddx39b	81	35.447	MGP_LPJ_G0031317	Ddx47	84	33.141
MGP_LPJ_G0023543	Ddx39b	85	38.356	MGP_LPJ_G0019380	Eif4a3	88	38.356
MGP_LPJ_G0023543	Ddx39b	50	37.327	MGP_LPJ_G0019381	Gm8994	78	37.327
MGP_LPJ_G0023543	Ddx39b	50	37.327	MGP_LPJ_G0019382	Gm5580	78	37.327
MGP_LPJ_G0023543	Ddx39b	84	32.970	MGP_LPJ_G0026840	Ddx27	54	32.134
MGP_LPJ_G0023543	Ddx39b	77	30.029	MGP_LPJ_G0019215	Ddx5	65	30.029
MGP_LPJ_G0023543	Ddx39b	86	32.891	MGP_LPJ_G0033607	Ddx49	97	33.046
MGP_LPJ_G0023543	Ddx39b	63	30.804	MGP_LPJ_G0016837	D1Pas1	57	30.105
MGP_LPJ_G0023543	Ddx39b	84	31.903	MGP_LPJ_G0034434	Ddx25	82	32.020
MGP_LPJ_G0023543	Ddx39b	63	30.804	MGP_LPJ_G0035462	Ddx3x	56	30.105
MGP_LPJ_G0023543	Ddx39b	86	38.919	MGP_LPJ_G0022580	Eif4a2	90	38.919
MGP_LPJ_G0023543	Ddx39b	100	90.888	MGP_LPJ_G0033746	Ddx39	100	90.888
MGP_LPJ_G0023543	Ddx39b	91	33.083	MGP_LPJ_G0034035	Ddx19a	82	33.083
MGP_LPJ_G0023543	Ddx39b	66	34.459	MGP_LPJ_G0034036	Ddx19b	77	34.459