EuRBPDB

Description

Ensembl ID: MGP_LPJ_G0026697 (Gene tree)
Gene ID: -
Gene Symbol: Rbm39
Alias: 1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|Caper|Caper alpha|R75070|Rnpc2|caper
Full Name: RNA binding motif protein 39
Gene Type: protein_coding
Species: Mus_musculus_lpj
Status: putative
Strand: Minus strand
Length: 35182 bases
Position: chr2:161143422-161178603
Accession: 2157953
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_LPJ_P0058579	RRM_1	PF00076.22	4.3e-41	1	2
MGP_LPJ_P0058579	RRM_1	PF00076.22	4.3e-41	2	2
MGP_LPJ_P0058581	RRM_1	PF00076.22	6e-41	1	2
MGP_LPJ_P0058581	RRM_1	PF00076.22	6e-41	2	2
MGP_LPJ_P0058583	RRM_1	PF00076.22	6e-41	1	2
MGP_LPJ_P0058583	RRM_1	PF00076.22	6e-41	2	2
MGP_LPJ_P0058586	RRM_1	PF00076.22	2.2e-22	1	1
MGP_LPJ_P0058587	RRM_1	PF00076.22	9.4e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_LPJ_T0058599	-	743	-	MGP_LPJ_P0058599	40 (aa)	-	-
MGP_LPJ_T0058598	-	585	-	MGP_LPJ_P0058598	62 (aa)	-	-
MGP_LPJ_T0058595	-	707	-	MGP_LPJ_P0058595	40 (aa)	-	-
MGP_LPJ_T0058594	-	685	-	-	- (aa)	-	-
MGP_LPJ_T0058597	-	710	-	-	- (aa)	-	-
MGP_LPJ_T0058596	-	593	-	MGP_LPJ_P0058596	39 (aa)	-	-
MGP_LPJ_T0058591	-	754	-	MGP_LPJ_P0058591	156 (aa)	-	-
MGP_LPJ_T0058590	-	1453	-	-	- (aa)	-	-
MGP_LPJ_T0058593	-	714	-	-	- (aa)	-	-
MGP_LPJ_T0058592	-	497	-	-	- (aa)	-	-
MGP_LPJ_T0058579	-	2900	XM_006498832	MGP_LPJ_P0058579	499 (aa)	XP_006498895	Q8VH51
MGP_LPJ_T0058588	-	695	-	-	- (aa)	-	-
MGP_LPJ_T0058589	-	546	-	-	- (aa)	-	-
MGP_LPJ_T0058582	-	2622	-	MGP_LPJ_P0058582	415 (aa)	-	-
MGP_LPJ_T0058583	-	2804	-	MGP_LPJ_P0058583	493 (aa)	-	-
MGP_LPJ_T0058580	-	2393	-	MGP_LPJ_P0058580	514 (aa)	-	-
MGP_LPJ_T0058581	-	2673	-	MGP_LPJ_P0058581	493 (aa)	-	-
MGP_LPJ_T0058586	-	931	-	MGP_LPJ_P0058586	310 (aa)	-	-
MGP_LPJ_T0058587	-	1090	-	MGP_LPJ_P0058587	273 (aa)	-	-
MGP_LPJ_T0058584	-	1998	-	MGP_LPJ_P0058584	40 (aa)	-	-
MGP_LPJ_T0058585	-	2005	-	MGP_LPJ_P0058585	47 (aa)	-	-
MGP_LPJ_T0058601	-	672	-	-	- (aa)	-	-
MGP_LPJ_T0058600	-	667	-	MGP_LPJ_P0058600	38 (aa)	-	-
MGP_LPJ_T0058603	-	1008	-	-	- (aa)	-	-
MGP_LPJ_T0058602	-	699	-	MGP_LPJ_P0058602	40 (aa)	-	-
MGP_LPJ_T0058604	-	715	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_LPJ_G0026697	Rbm39	52	34.483	MGP_LPJ_G0017404	Dazap1	94	34.483
MGP_LPJ_G0026697	Rbm39	71	40.000	MGP_LPJ_G0028358	Elavl2	92	40.541