EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_LPJ_G0026748 (Gene tree)
Gene ID: -
Gene Symbol: Srsf6
Alias: 1210001E11Rik|AI314910|AW146126|Sfrs6|Srp55
Full Name: serine/arginine-rich splicing factor 6
Gene Type: protein_coding
Species: Mus_musculus_lpj
Status: putative
Strand: Plus strand
Length: 5593 bases
Position: chr2:168358719-168364311
Accession: 1915246
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_LPJ_P0058860	RRM_1	PF00076.22	8.3e-32	1	2
MGP_LPJ_P0058860	RRM_1	PF00076.22	8.3e-32	2	2
MGP_LPJ_P0058862	RRM_1	PF00076.22	2e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_LPJ_T0058861	-	1666	-	MGP_LPJ_P0058861	135 (aa)	-	-
MGP_LPJ_T0058859	-	2895	-	-	- (aa)	-	-
MGP_LPJ_T0058862	-	515	-	MGP_LPJ_P0058862	135 (aa)	-	-
MGP_LPJ_T0058860	-	3530	-	MGP_LPJ_P0058860	339 (aa)	-	-

Gene Model

Click here to download MGP_LPJ_G0026748's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_LPJ_G0026748's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_LPJ_G0026748	Srsf6	58	40.670	MGP_LPJ_G0018823	Srsf1	82	42.857
MGP_LPJ_G0026748	Srsf6	56	35.526	MGP_LPJ_G0026662	Raly	54	35.526
MGP_LPJ_G0026748	Srsf6	51	47.297	MGP_LPJ_G0029866	Srsf9	70	38.674
MGP_LPJ_G0026748	Srsf6	61	31.868	MGP_LPJ_G0017398	Cirbp	84	31.868
MGP_LPJ_G0026748	Srsf6	56	39.241	MGP_LPJ_G0021790	Gm12355	60	39.241
MGP_LPJ_G0026748	Srsf6	53	35.443	MGP_LPJ_G0035637	Rbmx	77	35.443