EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_LPJ_G0026769 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1l
Alias: 1810053B01Rik|Epab|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1-like
Gene Type: protein_coding
Species: Mus_musculus_lpj
Status: putative
Strand: Plus strand
Length: 30671 bases
Position: chr2:169506638-169537308
Accession: 1922908
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_LPJ_P0058935	PABP	PF00658.18	1.8e-23	1	1
MGP_LPJ_P0058935	RRM_5	PF13893.6	3.2e-17	1	3
MGP_LPJ_P0058935	RRM_5	PF13893.6	3.2e-17	2	3
MGP_LPJ_P0058935	RRM_5	PF13893.6	3.2e-17	3	3
MGP_LPJ_P0058935	RRM_1	PF00076.22	3.5e-90	1	4
MGP_LPJ_P0058935	RRM_1	PF00076.22	3.5e-90	2	4
MGP_LPJ_P0058935	RRM_1	PF00076.22	3.5e-90	3	4
MGP_LPJ_P0058935	RRM_1	PF00076.22	3.5e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_LPJ_T0058939	-	329	-	-	- (aa)	-	-
MGP_LPJ_T0058938	-	751	-	-	- (aa)	-	-
MGP_LPJ_T0058937	-	438	-	-	- (aa)	-	-
MGP_LPJ_T0058936	-	617	-	-	- (aa)	-	-
MGP_LPJ_T0058935	-	2355	XM_006499825	MGP_LPJ_P0058935	607 (aa)	XP_006499888	A2A5N3

Gene Model

Click here to download MGP_LPJ_G0026769's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_LPJ_G0026769's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_LPJ_G0026769	Pabpc1l	53	39.759	MGP_LPJ_G0017398	Cirbp	91	39.759
MGP_LPJ_G0026769	Pabpc1l	60	35.870	MGP_LPJ_G0017472	Celf5	70	32.812
MGP_LPJ_G0026769	Pabpc1l	53	34.884	MGP_LPJ_G0025262	Celf2	57	34.884
MGP_LPJ_G0026769	Pabpc1l	64	57.022	MGP_LPJ_G0035943	Pabpc5	96	56.944
MGP_LPJ_G0026769	Pabpc1l	64	34.940	MGP_LPJ_G0028358	Elavl2	92	34.940
MGP_LPJ_G0026769	Pabpc1l	56	30.864	MGP_LPJ_G0020535	Hnrnpa0	50	31.613
MGP_LPJ_G0026769	Pabpc1l	59	60.736	MGP_LPJ_G0027128	Pabpc4l	95	60.736
MGP_LPJ_G0026769	Pabpc1l	59	30.818	MGP_LPJ_G0035290	Rbms3	77	30.818
MGP_LPJ_G0026769	Pabpc1l	60	35.484	MGP_LPJ_G0029901	Rbm19	72	36.066
MGP_LPJ_G0026769	Pabpc1l	99	61.478	MGP_LPJ_G0021700	Pabpc1	98	61.635
MGP_LPJ_G0026769	Pabpc1l	63	38.889	MGP_LPJ_G0034372	Elavl3	59	30.488
MGP_LPJ_G0026769	Pabpc1l	99	56.938	MGP_LPJ_G0024286	Pabpc2	98	56.938
MGP_LPJ_G0026769	Pabpc1l	57	34.118	MGP_LPJ_G0027482	Celf3	67	32.857
MGP_LPJ_G0026769	Pabpc1l	99	56.467	MGP_LPJ_G0023047	Pabpc6	97	56.625
MGP_LPJ_G0026769	Pabpc1l	62	33.735	MGP_LPJ_G0028490	Elavl4	89	33.735
MGP_LPJ_G0026769	Pabpc1l	59	38.095	MGP_LPJ_G0030871	Tia1	87	38.095