EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_LPJ_G0027568 (Gene tree)
Gene ID: -
Gene Symbol: Chd1l
Alias: 4432404A22Rik|Alc1|Snf2p
Full Name: chromodomain helicase DNA binding protein 1-like
Gene Type: protein_coding
Species: Mus_musculus_lpj
Status: putative
Strand: Minus strand
Length: 53161 bases
Position: chr3:99766399-99819559
Accession: 1915308
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_LPJ_P0062510	ResIII	PF04851.15	1.2e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_LPJ_T0062510	-	3008	XM_017319700	MGP_LPJ_P0062510	900 (aa)	XP_017175189	Q9CXF7
MGP_LPJ_T0062511	-	2712	-	MGP_LPJ_P0062511	892 (aa)	-	-
MGP_LPJ_T0062512	-	501	-	-	- (aa)	-	-
MGP_LPJ_T0062513	-	2941	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_LPJ_G0027568's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_LPJ_G0027568's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_LPJ_G0027568	Chd1l	54	39.054	MGP_LPJ_G0025024	Hells	69	39.054
MGP_LPJ_G0027568	Chd1l	51	35.135	MGP_LPJ_G0030730	Smarcad1	50	35.135
MGP_LPJ_G0027568	Chd1l	62	44.000	MGP_LPJ_G0035573	Smarca1	75	43.101
MGP_LPJ_G0027568	Chd1l	50	30.584	MGP_LPJ_G0028531	Rad54l	66	30.785
MGP_LPJ_G0027568	Chd1l	50	30.528	MGP_LPJ_G0027979	Rad54b	56	30.528
MGP_LPJ_G0027568	Chd1l	64	42.568	MGP_LPJ_G0033726	Smarca5	59	41.042
MGP_LPJ_G0027568	Chd1l	50	32.657	MGP_LPJ_G0020577	Ercc6l2	81	30.021