EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_LPJ_G0028780 (Gene tree)
Gene ID: -
Gene Symbol: Trnau1ap
Alias: 1110007F05Rik|AA387999|SECp43|Secp43|Trspap1|WI1-2643G14.2
Full Name: tRNA selenocysteine 1 associated protein 1
Gene Type: protein_coding
Species: Mus_musculus_lpj
Status: putative
Strand: Minus strand
Length: 18960 bases
Position: chr4:134610340-134629299
Accession: 1919037
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_LPJ_P0068066	RRM_1	PF00076.22	4.3e-27	1	2
MGP_LPJ_P0068066	RRM_1	PF00076.22	4.3e-27	2	2
MGP_LPJ_P0068065	RRM_1	PF00076.22	1.7e-17	1	1
MGP_LPJ_P0068070	RRM_1	PF00076.22	1.6e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_LPJ_T0068066	-	1130	-	MGP_LPJ_P0068066	287 (aa)	-	-
MGP_LPJ_T0068067	-	1791	-	-	- (aa)	-	-
MGP_LPJ_T0068065	-	961	XM_011250332	MGP_LPJ_P0068065	247 (aa)	XP_011248634	Q80VC6
MGP_LPJ_T0068071	-	600	-	MGP_LPJ_P0068071	47 (aa)	-	-
MGP_LPJ_T0068070	-	474	-	MGP_LPJ_P0068070	146 (aa)	-	-
MGP_LPJ_T0068073	-	663	-	MGP_LPJ_P0068073	49 (aa)	-	-
MGP_LPJ_T0068072	-	553	-	-	- (aa)	-	-
MGP_LPJ_T0068075	-	371	-	MGP_LPJ_P0068075	70 (aa)	-	-
MGP_LPJ_T0068074	-	679	-	-	- (aa)	-	-
MGP_LPJ_T0068068	-	650	-	-	- (aa)	-	-
MGP_LPJ_T0068069	-	1017	-	MGP_LPJ_P0068069	86 (aa)	-	-
MGP_LPJ_T0068076	-	621	-	-	- (aa)	-	-

Gene Model

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Protein-Protein Interaction (PPI)

Clik here to download MGP_LPJ_G0028780's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_LPJ_G0028780	Trnau1ap	79	30.198	MGP_LPJ_G0030871	Tia1	60	31.285
MGP_LPJ_G0028780	Trnau1ap	60	32.386	MGP_LPJ_G0032999	Tial1	73	33.019
MGP_LPJ_G0028780	Trnau1ap	88	34.211	MGP_LPJ_G0027128	Pabpc4l	89	31.875
MGP_LPJ_G0028780	Trnau1ap	98	30.952	MGP_LPJ_G0028358	Elavl2	66	30.952