EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_LPJ_G0029032 (Gene tree)
Gene ID: -
Gene Symbol: Tardbp
Alias: 1190002A23Rik|C85084|TARDBP|TDP-43|Tdp43
Full Name: TAR DNA binding protein
Gene Type: protein_coding
Species: Mus_musculus_lpj
Status: putative
Strand: Minus strand
Length: 17715 bases
Position: chr4:152307052-152324766
Accession: 2387629
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_LPJ_P0069086	RRM_1	PF00076.22	4e-26	1	2
MGP_LPJ_P0069086	RRM_1	PF00076.22	4e-26	2	2
MGP_LPJ_P0069076	RRM_1	PF00076.22	4.7e-26	1	2
MGP_LPJ_P0069076	RRM_1	PF00076.22	4.7e-26	2	2
MGP_LPJ_P0069084	RRM_1	PF00076.22	4.7e-26	1	2
MGP_LPJ_P0069084	RRM_1	PF00076.22	4.7e-26	2	2
MGP_LPJ_P0069077	RRM_1	PF00076.22	4.9e-26	1	2
MGP_LPJ_P0069077	RRM_1	PF00076.22	4.9e-26	2	2
MGP_LPJ_P0069085	RRM_1	PF00076.22	4.9e-26	1	2
MGP_LPJ_P0069085	RRM_1	PF00076.22	4.9e-26	2	2
MGP_LPJ_P0069082	RRM_1	PF00076.22	1.2e-25	1	2
MGP_LPJ_P0069082	RRM_1	PF00076.22	1.2e-25	2	2
MGP_LPJ_P0069089	RRM_1	PF00076.22	4e-15	1	1
MGP_LPJ_P0069090	RRM_1	PF00076.22	4.9e-11	1	1
MGP_LPJ_P0069083	RRM_1	PF00076.22	4.6e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_LPJ_T0069089	-	818	-	MGP_LPJ_P0069089	243 (aa)	-	-
MGP_LPJ_T0069088	-	1411	-	MGP_LPJ_P0069088	84 (aa)	-	-
MGP_LPJ_T0069087	-	1124	-	MGP_LPJ_P0069087	285 (aa)	-	-
MGP_LPJ_T0069086	-	851	-	MGP_LPJ_P0069086	283 (aa)	-	-
MGP_LPJ_T0069085	-	939	-	MGP_LPJ_P0069085	304 (aa)	-	-
MGP_LPJ_T0069084	-	921	-	MGP_LPJ_P0069084	298 (aa)	-	-
MGP_LPJ_T0069083	-	502	-	MGP_LPJ_P0069083	109 (aa)	-	-
MGP_LPJ_T0069082	-	2465	-	MGP_LPJ_P0069082	414 (aa)	-	-
MGP_LPJ_T0069081	-	1783	-	MGP_LPJ_P0069081	298 (aa)	-	-
MGP_LPJ_T0069080	-	529	-	MGP_LPJ_P0069080	98 (aa)	-	-
MGP_LPJ_T0069091	-	370	-	-	- (aa)	-	-
MGP_LPJ_T0069090	-	740	-	MGP_LPJ_P0069090	149 (aa)	-	-
MGP_LPJ_T0069078	-	1550	-	MGP_LPJ_P0069078	298 (aa)	-	-
MGP_LPJ_T0069079	-	731	-	-	- (aa)	-	-
MGP_LPJ_T0069076	-	6023	XM_011250237	MGP_LPJ_P0069076	298 (aa)	XP_011248539	Q921F2
MGP_LPJ_T0069077	-	6041	-	MGP_LPJ_P0069077	304 (aa)	-	-

Gene Model

Click here to download MGP_LPJ_G0029032's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_LPJ_G0029032's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_LPJ_G0029032	Tardbp	65	30.928	MGP_LPJ_G0030637	Hnrnpa2b1	66	30.348
MGP_LPJ_G0029032	Tardbp	66	34.247	MGP_LPJ_G0018828	Msi2	100	35.398
MGP_LPJ_G0029032	Tardbp	65	34.043	MGP_LPJ_G0029681	Hnrnpd	75	51.389
MGP_LPJ_G0029032	Tardbp	60	33.333	MGP_LPJ_G0018178	Hnrnpab	82	32.099
MGP_LPJ_G0029032	Tardbp	56	32.117	MGP_LPJ_G0029683	Hnrnpdl	64	30.000
MGP_LPJ_G0029032	Tardbp	77	31.481	MGP_LPJ_G0033249	Elavl1	59	31.481
MGP_LPJ_G0029032	Tardbp	72	33.582	MGP_LPJ_G0029870	Msi1	62	34.021
MGP_LPJ_G0029032	Tardbp	55	31.288	MGP_LPJ_G0022337	Hnrnpa1	53	30.151
MGP_LPJ_G0029032	Tardbp	60	33.508	MGP_LPJ_G0017404	Dazap1	89	33.766