EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_LPJ_G0029681 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpd
Alias: Auf1|Hnrpd
Full Name: heterogeneous nuclear ribonucleoprotein D
Gene Type: protein_coding
Species: Mus_musculus_lpj
Status: putative
Strand: Minus strand
Length: 23633 bases
Position: chr5:102005026-102028658
Accession: 101947
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_LPJ_P0072579	RRM_1	PF00076.22	5.2e-36	1	2
MGP_LPJ_P0072579	RRM_1	PF00076.22	5.2e-36	2	2
MGP_LPJ_P0072577	RRM_1	PF00076.22	6.5e-36	1	2
MGP_LPJ_P0072577	RRM_1	PF00076.22	6.5e-36	2	2
MGP_LPJ_P0072578	RRM_1	PF00076.22	8.9e-36	1	2
MGP_LPJ_P0072578	RRM_1	PF00076.22	8.9e-36	2	2
MGP_LPJ_P0072576	RRM_1	PF00076.22	1.1e-35	1	2
MGP_LPJ_P0072576	RRM_1	PF00076.22	1.1e-35	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_LPJ_T0072578	-	1586	-	MGP_LPJ_P0072578	308 (aa)	-	-
MGP_LPJ_T0072577	-	1916	-	MGP_LPJ_P0072577	278 (aa)	-	-
MGP_LPJ_T0072576	-	6711	XM_006534735	MGP_LPJ_P0072576	327 (aa)	XP_006534798	Q60668
MGP_LPJ_T0072582	-	699	-	MGP_LPJ_P0072582	131 (aa)	-	-
MGP_LPJ_T0072583	-	1020	-	MGP_LPJ_P0072583	58 (aa)	-	-
MGP_LPJ_T0072579	-	1453	-	MGP_LPJ_P0072579	259 (aa)	-	-
MGP_LPJ_T0072581	-	737	-	MGP_LPJ_P0072581	150 (aa)	-	-
MGP_LPJ_T0072584	-	425	-	-	- (aa)	-	-
MGP_LPJ_T0072580	-	1117	-	MGP_LPJ_P0072580	215 (aa)	-	-

Gene Model

Click here to download MGP_LPJ_G0029681's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_LPJ_G0029681's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_LPJ_G0029681	Hnrnpd	87	58.025	MGP_LPJ_G0018828	Msi2	100	53.982
MGP_LPJ_G0029681	Hnrnpd	64	37.931	MGP_LPJ_G0035427	Rbm3	80	36.709
MGP_LPJ_G0029681	Hnrnpd	80	72.674	MGP_LPJ_G0029683	Hnrnpdl	87	65.074
MGP_LPJ_G0029681	Hnrnpd	97	70.616	MGP_LPJ_G0018178	Hnrnpab	77	70.183
MGP_LPJ_G0029681	Hnrnpd	75	51.389	MGP_LPJ_G0029032	Tardbp	65	34.043
MGP_LPJ_G0029681	Hnrnpd	89	44.162	MGP_LPJ_G0029870	Msi1	62	42.857
MGP_LPJ_G0029681	Hnrnpd	83	41.053	MGP_LPJ_G0030637	Hnrnpa2b1	72	41.148
MGP_LPJ_G0029681	Hnrnpd	78	38.728	MGP_LPJ_G0025788	Hnrnpa3	57	38.835
MGP_LPJ_G0029681	Hnrnpd	68	37.931	MGP_LPJ_G0017398	Cirbp	83	37.931
MGP_LPJ_G0029681	Hnrnpd	81	38.693	MGP_LPJ_G0017404	Dazap1	99	39.521
MGP_LPJ_G0029681	Hnrnpd	69	35.294	MGP_LPJ_G0015950	Boll	50	35.294
MGP_LPJ_G0029681	Hnrnpd	77	36.257	MGP_LPJ_G0020535	Hnrnpa0	86	34.173
MGP_LPJ_G0029681	Hnrnpd	65	40.000	MGP_LPJ_G0035637	Rbmx	82	43.750