EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_LPJ_G0029870 (Gene tree)
Gene ID: -
Gene Symbol: Msi1
Alias: Msi1|Msi1h|Musahi1|m-Msi-1
Full Name: musashi RNA-binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_lpj
Status: putative
Strand: Plus strand
Length: 29893 bases
Position: chr5:118863517-118893409
Accession: 107376
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_LPJ_P0073482	RRM_1	PF00076.22	6.9e-33	1	2
MGP_LPJ_P0073482	RRM_1	PF00076.22	6.9e-33	2	2
MGP_LPJ_P0073483	RRM_1	PF00076.22	1.6e-28	1	2
MGP_LPJ_P0073483	RRM_1	PF00076.22	1.6e-28	2	2
MGP_LPJ_P0073487	RRM_1	PF00076.22	1.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_LPJ_T0073488	-	596	-	-	- (aa)	-	-
MGP_LPJ_T0073481	-	2626	-	-	- (aa)	-	-
MGP_LPJ_T0073482	-	2495	-	MGP_LPJ_P0073482	362 (aa)	-	-
MGP_LPJ_T0073483	-	807	-	MGP_LPJ_P0073483	268 (aa)	-	-
MGP_LPJ_T0073484	-	367	-	-	- (aa)	-	-
MGP_LPJ_T0073485	-	806	-	-	- (aa)	-	-
MGP_LPJ_T0073486	-	581	-	-	- (aa)	-	-
MGP_LPJ_T0073487	-	726	-	MGP_LPJ_P0073487	196 (aa)	-	-

Gene Model

Click here to download MGP_LPJ_G0029870's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_LPJ_G0029870's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_LPJ_G0029870	Msi1	61	43.750	MGP_LPJ_G0030637	Hnrnpa2b1	91	41.379
MGP_LPJ_G0029870	Msi1	62	34.021	MGP_LPJ_G0029032	Tardbp	72	33.582
MGP_LPJ_G0029870	Msi1	88	42.308	MGP_LPJ_G0017404	Dazap1	98	44.311
MGP_LPJ_G0029870	Msi1	99	75.665	MGP_LPJ_G0018828	Msi2	100	90.323
MGP_LPJ_G0029870	Msi1	58	48.052	MGP_LPJ_G0029683	Hnrnpdl	75	39.676
MGP_LPJ_G0029870	Msi1	59	36.782	MGP_LPJ_G0025788	Hnrnpa3	65	36.782
MGP_LPJ_G0029870	Msi1	58	48.052	MGP_LPJ_G0018178	Hnrnpab	79	40.800
MGP_LPJ_G0029870	Msi1	51	38.983	MGP_LPJ_G0017398	Cirbp	87	40.351
MGP_LPJ_G0029870	Msi1	59	39.080	MGP_LPJ_G0022337	Hnrnpa1	63	39.080
MGP_LPJ_G0029870	Msi1	56	41.379	MGP_LPJ_G0032999	Tial1	69	31.469
MGP_LPJ_G0029870	Msi1	61	51.064	MGP_LPJ_G0026886	Rbm38	66	46.809
MGP_LPJ_G0029870	Msi1	57	42.949	MGP_LPJ_G0020535	Hnrnpa0	59	43.646
MGP_LPJ_G0029870	Msi1	62	42.857	MGP_LPJ_G0029681	Hnrnpd	89	44.162