EuRBPDB

Description

RBDs

Transcripts

Gene Model

Paralogs

Description

Ensembl ID: MGP_LPJ_G0030266 (Gene tree)
Gene ID: -
Gene Symbol: Cpsf4
Alias: 30kDa|C79664|Cpsf30
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Mus_musculus_lpj
Status: putative
Strand: Plus strand
Length: 14688 bases
Position: chr5:151178878-151193565
Accession: 1861602
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_LPJ_P0075631	zf-CCCH	PF00642.24	1.1e-20	1	2
MGP_LPJ_P0075631	zf-CCCH	PF00642.24	1.1e-20	2	2
MGP_LPJ_P0075626	zf-CCCH	PF00642.24	3e-20	1	2
MGP_LPJ_P0075626	zf-CCCH	PF00642.24	3e-20	2	2
MGP_LPJ_P0075629	zf-CCCH	PF00642.24	3.1e-20	1	2
MGP_LPJ_P0075629	zf-CCCH	PF00642.24	3.1e-20	2	2
MGP_LPJ_P0075628	zf-CCCH	PF00642.24	5.9e-20	1	2
MGP_LPJ_P0075628	zf-CCCH	PF00642.24	5.9e-20	2	2
MGP_LPJ_P0075627	zf-CCCH	PF00642.24	2.4e-15	1	2
MGP_LPJ_P0075627	zf-CCCH	PF00642.24	2.4e-15	2	2
MGP_LPJ_P0075627	zf-CCHC	PF00098.23	5.5e-06	1	1
MGP_LPJ_P0075626	zf-CCHC	PF00098.23	6.6e-06	1	1
MGP_LPJ_P0075629	zf-CCHC	PF00098.23	6.7e-06	1	1
MGP_LPJ_P0075628	zf-CCHC	PF00098.23	7.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_LPJ_T0075631	-	841	-	MGP_LPJ_P0075631	207 (aa)	-	-
MGP_LPJ_T0075630	-	1210	-	MGP_LPJ_P0075630	62 (aa)	-	-
MGP_LPJ_T0075632	-	2976	-	-	- (aa)	-	-
MGP_LPJ_T0075628	-	1765	-	MGP_LPJ_P0075628	269 (aa)	-	-
MGP_LPJ_T0075629	-	1396	-	MGP_LPJ_P0075629	244 (aa)	-	-
MGP_LPJ_T0075626	-	1722	XM_006504845	MGP_LPJ_P0075626	243 (aa)	XP_006504908	Q8BQZ5
MGP_LPJ_T0075627	-	1615	-	MGP_LPJ_P0075627	211 (aa)	-	-

Gene Model

Click here to download MGP_LPJ_G0030266's gene model file

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_LPJ_G0030266	Cpsf4	86	52.358	MGP_LPJ_G0019256	Cpsf4l	82	62.400