EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_LPJ_G0030735 (Gene tree)
Gene ID: -
Gene Symbol: Prdm5
Alias: 4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2
Full Name: PR domain containing 5
Gene Type: protein_coding
Species: Mus_musculus_lpj
Status: putative
Strand: Plus strand
Length: 157279 bases
Position: chr6:65643236-65800514
Accession: 1918029
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_LPJ_P0077678	zf-C2H2	PF00096.26	5.7e-59	1	9
MGP_LPJ_P0077678	zf-C2H2	PF00096.26	5.7e-59	2	9
MGP_LPJ_P0077678	zf-C2H2	PF00096.26	5.7e-59	3	9
MGP_LPJ_P0077678	zf-C2H2	PF00096.26	5.7e-59	4	9
MGP_LPJ_P0077678	zf-C2H2	PF00096.26	5.7e-59	5	9
MGP_LPJ_P0077678	zf-C2H2	PF00096.26	5.7e-59	6	9
MGP_LPJ_P0077678	zf-C2H2	PF00096.26	5.7e-59	7	9
MGP_LPJ_P0077678	zf-C2H2	PF00096.26	5.7e-59	8	9
MGP_LPJ_P0077678	zf-C2H2	PF00096.26	5.7e-59	9	9
MGP_LPJ_P0077673	zf-C2H2	PF00096.26	1e-58	1	9
MGP_LPJ_P0077673	zf-C2H2	PF00096.26	1e-58	2	9
MGP_LPJ_P0077673	zf-C2H2	PF00096.26	1e-58	3	9
MGP_LPJ_P0077673	zf-C2H2	PF00096.26	1e-58	4	9
MGP_LPJ_P0077673	zf-C2H2	PF00096.26	1e-58	5	9
MGP_LPJ_P0077673	zf-C2H2	PF00096.26	1e-58	6	9
MGP_LPJ_P0077673	zf-C2H2	PF00096.26	1e-58	7	9
MGP_LPJ_P0077673	zf-C2H2	PF00096.26	1e-58	8	9
MGP_LPJ_P0077673	zf-C2H2	PF00096.26	1e-58	9	9
MGP_LPJ_P0077676	zf-C2H2	PF00096.26	1e-48	1	9
MGP_LPJ_P0077676	zf-C2H2	PF00096.26	1e-48	2	9
MGP_LPJ_P0077676	zf-C2H2	PF00096.26	1e-48	3	9
MGP_LPJ_P0077676	zf-C2H2	PF00096.26	1e-48	4	9
MGP_LPJ_P0077676	zf-C2H2	PF00096.26	1e-48	5	9
MGP_LPJ_P0077676	zf-C2H2	PF00096.26	1e-48	6	9
MGP_LPJ_P0077676	zf-C2H2	PF00096.26	1e-48	7	9
MGP_LPJ_P0077676	zf-C2H2	PF00096.26	1e-48	8	9
MGP_LPJ_P0077676	zf-C2H2	PF00096.26	1e-48	9	9
MGP_LPJ_P0077675	zf-C2H2	PF00096.26	8.1e-27	1	5
MGP_LPJ_P0077675	zf-C2H2	PF00096.26	8.1e-27	2	5
MGP_LPJ_P0077675	zf-C2H2	PF00096.26	8.1e-27	3	5
MGP_LPJ_P0077675	zf-C2H2	PF00096.26	8.1e-27	4	5
MGP_LPJ_P0077675	zf-C2H2	PF00096.26	8.1e-27	5	5
MGP_LPJ_P0077678	zf-met	PF12874.7	1.5e-20	1	3
MGP_LPJ_P0077678	zf-met	PF12874.7	1.5e-20	2	3
MGP_LPJ_P0077678	zf-met	PF12874.7	1.5e-20	3	3
MGP_LPJ_P0077673	zf-met	PF12874.7	2.7e-20	1	3
MGP_LPJ_P0077673	zf-met	PF12874.7	2.7e-20	2	3
MGP_LPJ_P0077673	zf-met	PF12874.7	2.7e-20	3	3
MGP_LPJ_P0077676	zf-met	PF12874.7	8.8e-17	1	3
MGP_LPJ_P0077676	zf-met	PF12874.7	8.8e-17	2	3
MGP_LPJ_P0077676	zf-met	PF12874.7	8.8e-17	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_LPJ_T0077677	-	4096	-	-	- (aa)	-	-
MGP_LPJ_T0077676	-	1488	-	MGP_LPJ_P0077676	415 (aa)	-	-
MGP_LPJ_T0077675	-	984	-	MGP_LPJ_P0077675	221 (aa)	-	-
MGP_LPJ_T0077674	-	1938	-	-	- (aa)	-	-
MGP_LPJ_T0077673	-	2155	XM_006506600	MGP_LPJ_P0077673	599 (aa)	XP_006506663	Q9CXE0
MGP_LPJ_T0077679	-	1920	-	-	- (aa)	-	-
MGP_LPJ_T0077678	-	1740	-	MGP_LPJ_P0077678	579 (aa)	-	-

Gene Model

Click here to download MGP_LPJ_G0030735's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_LPJ_G0030735's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_LPJ_G0030735	Prdm5	68	42.361	MGP_LPJ_G0030603	Repin1	92	42.069
MGP_LPJ_G0030735	Prdm5	88	42.857	MGP_LPJ_G0018260	Zfp672	86	44.286
MGP_LPJ_G0030735	Prdm5	90	42.609	MGP_LPJ_G0033673	Zfp882	94	35.714
MGP_LPJ_G0030735	Prdm5	74	40.104	MGP_LPJ_G0031473	Zfp628	60	38.208
MGP_LPJ_G0030735	Prdm5	75	39.799	MGP_LPJ_G0031827	-	87	39.799
MGP_LPJ_G0030735	Prdm5	83	42.857	MGP_LPJ_G0020604	Rslcan18	64	45.312
MGP_LPJ_G0030735	Prdm5	83	38.014	MGP_LPJ_G0020605	Zfp759	94	39.262
MGP_LPJ_G0030735	Prdm5	90	47.191	MGP_LPJ_G0026827	Zfp334	67	40.000
MGP_LPJ_G0030735	Prdm5	86	46.739	MGP_LPJ_G0024520	Zfp236	77	35.714
MGP_LPJ_G0030735	Prdm5	95	43.220	MGP_LPJ_G0023139	Zfp677	79	36.027
MGP_LPJ_G0030735	Prdm5	91	48.387	MGP_LPJ_G0031892	Zfp420	95	41.722
MGP_LPJ_G0030735	Prdm5	78	44.444	MGP_LPJ_G0031076	Zfp637	83	46.479
MGP_LPJ_G0030735	Prdm5	70	48.315	MGP_LPJ_G0023161	Zfp945	82	35.252
MGP_LPJ_G0030735	Prdm5	72	48.760	MGP_LPJ_G0032020	Zfp715	66	39.333
MGP_LPJ_G0030735	Prdm5	74	48.913	MGP_LPJ_G0031726	Zfp94	73	48.913
MGP_LPJ_G0030735	Prdm5	68	47.826	MGP_LPJ_G0031725	Zfp61	54	41.102
MGP_LPJ_G0030735	Prdm5	68	46.154	MGP_LPJ_G0031724	Zfp108	66	38.411
MGP_LPJ_G0030735	Prdm5	96	39.683	MGP_LPJ_G0023141	Zfp51	98	39.683
MGP_LPJ_G0030735	Prdm5	76	40.000	MGP_LPJ_G0018891	Zfp652	50	36.242
MGP_LPJ_G0030735	Prdm5	67	46.667	MGP_LPJ_G0031756	Zfp574	85	30.051
MGP_LPJ_G0030735	Prdm5	61	45.045	MGP_LPJ_G0026166	Wt1	55	40.876
MGP_LPJ_G0030735	Prdm5	68	48.544	MGP_LPJ_G0034129	Snai3	55	42.336
MGP_LPJ_G0030735	Prdm5	73	40.562	MGP_LPJ_G0032949	Zfp768	53	43.571
MGP_LPJ_G0030735	Prdm5	75	34.545	MGP_LPJ_G0026864	Zfp64	69	31.561
MGP_LPJ_G0030735	Prdm5	78	34.752	MGP_LPJ_G0033890	Zfp319	88	34.602
MGP_LPJ_G0030735	Prdm5	78	38.571	MGP_LPJ_G0018163	Zfp454	68	38.571
MGP_LPJ_G0030735	Prdm5	74	43.846	MGP_LPJ_G0029744	Gfi1	99	45.133
MGP_LPJ_G0030735	Prdm5	76	49.451	MGP_LPJ_G0034316	Zfp26	70	49.451
MGP_LPJ_G0030735	Prdm5	84	32.735	MGP_LPJ_G0031481	Zfp865	78	32.895
MGP_LPJ_G0030735	Prdm5	74	37.838	MGP_LPJ_G0032952	E430018J23Rik	71	37.838
MGP_LPJ_G0030735	Prdm5	76	39.057	MGP_LPJ_G0032013	2610021A01Rik	56	39.057
MGP_LPJ_G0030735	Prdm5	77	39.594	MGP_LPJ_G0032019	Zfp141	73	36.760
MGP_LPJ_G0030735	Prdm5	90	35.235	MGP_LPJ_G0023165	Zscan10	88	44.915
MGP_LPJ_G0030735	Prdm5	67	50.847	MGP_LPJ_G0034047	Zfp1	67	40.167
MGP_LPJ_G0030735	Prdm5	69	47.857	MGP_LPJ_G0031719	Zfp112	68	39.711
MGP_LPJ_G0030735	Prdm5	84	36.545	MGP_LPJ_G0018308	Zfp867	95	36.545
MGP_LPJ_G0030735	Prdm5	91	39.062	MGP_LPJ_G0021915	Zfp251	68	51.020
MGP_LPJ_G0030735	Prdm5	79	40.244	MGP_LPJ_G0029407	Zbtb49	96	45.070
MGP_LPJ_G0030735	Prdm5	81	42.941	MGP_LPJ_G0026401	Zfp661	65	42.941