EuRBPDB

Description

RBDs

Transcripts

Gene Model

Paralogs

Description

Ensembl ID: MGP_LPJ_G0031804 (Gene tree)
Gene ID: -
Gene Symbol: Snrpa
Alias: C430021M15Rik|Rnu1a-1|Rnu1a1|U1 snRNP|U1-A|U1A
Full Name: small nuclear ribonucleoprotein polypeptide A
Gene Type: protein_coding
Species: Mus_musculus_lpj
Status: putative
Strand: Minus strand
Length: 12867 bases
Position: chr7:26146726-26159592
Accession: 1855690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_LPJ_P0082205	RRM_5	PF13893.6	4e-06	1	2
MGP_LPJ_P0082205	RRM_5	PF13893.6	4e-06	2	2
MGP_LPJ_P0082206	RRM_5	PF13893.6	4e-06	1	2
MGP_LPJ_P0082206	RRM_5	PF13893.6	4e-06	2	2
MGP_LPJ_P0082207	RRM_5	PF13893.6	4e-06	1	2
MGP_LPJ_P0082207	RRM_5	PF13893.6	4e-06	2	2
MGP_LPJ_P0082205	RRM_1	PF00076.22	1.4e-27	1	2
MGP_LPJ_P0082205	RRM_1	PF00076.22	1.4e-27	2	2
MGP_LPJ_P0082206	RRM_1	PF00076.22	1.4e-27	1	2
MGP_LPJ_P0082206	RRM_1	PF00076.22	1.4e-27	2	2
MGP_LPJ_P0082207	RRM_1	PF00076.22	1.4e-27	1	2
MGP_LPJ_P0082207	RRM_1	PF00076.22	1.4e-27	2	2
MGP_LPJ_P0082208	RRM_1	PF00076.22	1.1e-18	1	2
MGP_LPJ_P0082208	RRM_1	PF00076.22	1.1e-18	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_LPJ_T0082206	-	1158	-	MGP_LPJ_P0082206	287 (aa)	-	-
MGP_LPJ_T0082207	-	1187	-	MGP_LPJ_P0082207	287 (aa)	-	-
MGP_LPJ_T0082205	-	1110	-	MGP_LPJ_P0082205	287 (aa)	-	Q62189
MGP_LPJ_T0082210	-	1690	-	-	- (aa)	-	-
MGP_LPJ_T0082208	-	968	-	MGP_LPJ_P0082208	247 (aa)	-	-
MGP_LPJ_T0082209	-	510	-	MGP_LPJ_P0082209	44 (aa)	-	-

Gene Model

Click here to download MGP_LPJ_G0031804's gene model file

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_LPJ_G0031804	Snrpa	98	89.669	MGP_LPJ_G0023123	Gm5145	96	90.074
MGP_LPJ_G0031804	Snrpa	92	55.094	MGP_LPJ_G0026511	Snrpb2	99	63.121