EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_LPJ_G0033376 (Gene tree)
Gene ID: -
Gene Symbol: Zmat4
Alias: 9630048M01Rik
Full Name: zinc finger%2C matrin type 4
Gene Type: protein_coding
Species: Mus_musculus_lpj
Status: putative
Strand: Plus strand
Length: 554346 bases
Position: chr8:21560959-22115304
Accession: 2443497
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_LPJ_P0088166	zf-met	PF12874.7	2.9e-27	1	4
MGP_LPJ_P0088166	zf-met	PF12874.7	2.9e-27	2	4
MGP_LPJ_P0088166	zf-met	PF12874.7	2.9e-27	3	4
MGP_LPJ_P0088166	zf-met	PF12874.7	2.9e-27	4	4
MGP_LPJ_P0088165	zf-met	PF12874.7	8.9e-13	1	2
MGP_LPJ_P0088165	zf-met	PF12874.7	8.9e-13	2	2
MGP_LPJ_P0088168	zf-met	PF12874.7	3.1e-06	1	1
MGP_LPJ_P0088166	zf-C2H2_jaz	PF12171.8	4.8e-23	1	2
MGP_LPJ_P0088166	zf-C2H2_jaz	PF12171.8	4.8e-23	2	2
MGP_LPJ_P0088165	zf-C2H2_jaz	PF12171.8	2.5e-09	1	1
MGP_LPJ_P0088168	zf-C2H2_jaz	PF12171.8	9.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_LPJ_T0088165	-	361	XM_006509139	MGP_LPJ_P0088165	96 (aa)	XP_006509202	Q8BZ94
MGP_LPJ_T0088167	-	2272	-	MGP_LPJ_P0088167	225 (aa)	-	-
MGP_LPJ_T0088166	-	4182	-	MGP_LPJ_P0088166	229 (aa)	-	-
MGP_LPJ_T0088169	-	348	-	-	- (aa)	-	-
MGP_LPJ_T0088168	-	454	-	MGP_LPJ_P0088168	68 (aa)	-	-

Gene Model

Click here to download MGP_LPJ_G0033376's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_LPJ_G0033376's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_LPJ_G0033376	Zmat4	84	35.172	MGP_LPJ_G0027073	Zmat3	74	35.172
MGP_LPJ_G0033376	Zmat4	94	50.549	MGP_LPJ_G0020493	Zfp346	75	44.022