EuRBPDB

Description

Ensembl ID: MGP_LPJ_G0033726 (Gene tree)
Gene ID: -
Gene Symbol: Smarca5
Alias: 4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 5
Gene Type: protein_coding
Species: Mus_musculus_lpj
Status: putative
Strand: Minus strand
Length: 47870 bases
Position: chr8:81510638-81558507
Accession: 1935129
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_LPJ_P0089298	ResIII	PF04851.15	2.2e-10	1	1
MGP_LPJ_P0089298	DEAD	PF00270.29	6.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_LPJ_T0089304	-	699	-	-	- (aa)	-	-
MGP_LPJ_T0089305	-	722	-	-	- (aa)	-	-
MGP_LPJ_T0089302	-	503	-	-	- (aa)	-	-
MGP_LPJ_T0089303	-	334	-	-	- (aa)	-	-
MGP_LPJ_T0089300	-	4073	-	MGP_LPJ_P0089300	1023 (aa)	-	-
MGP_LPJ_T0089301	-	3123	-	-	- (aa)	-	-
MGP_LPJ_T0089298	-	7856	-	MGP_LPJ_P0089298	1401 (aa)	-	Q91ZW3
MGP_LPJ_T0089299	-	4103	-	MGP_LPJ_P0089299	1033 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_LPJ_G0033726	Smarca5	98	81.953	MGP_LPJ_G0035573	Smarca1	93	84.280
MGP_LPJ_G0033726	Smarca5	59	41.042	MGP_LPJ_G0027568	Chd1l	64	42.568
MGP_LPJ_G0033726	Smarca5	52	48.207	MGP_LPJ_G0025024	Hells	63	48.207