EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_LPJ_G0033746 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39
Alias: 2610307C23Rik|BAT1|DDXL|Ddx39a|URH49
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
Gene Type: protein_coding
Species: Mus_musculus_lpj
Status: putative
Strand: Plus strand
Length: 11700 bases
Position: chr8:84661639-84673338
Accession: 1915528
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_LPJ_P0089358	ResIII	PF04851.15	3.1e-05	1	1
MGP_LPJ_P0089361	ResIII	PF04851.15	3.1e-05	1	1
MGP_LPJ_P0089362	ResIII	PF04851.15	3.1e-05	1	1
MGP_LPJ_P0089358	DEAD	PF00270.29	4.1e-38	1	1
MGP_LPJ_P0089361	DEAD	PF00270.29	4.1e-38	1	1
MGP_LPJ_P0089362	DEAD	PF00270.29	4.1e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_LPJ_T0089359	-	1927	-	-	- (aa)	-	-
MGP_LPJ_T0089358	-	1656	XM_006531332	MGP_LPJ_P0089358	427 (aa)	XP_006531395	Q8VDW0
MGP_LPJ_T0089360	-	1551	-	MGP_LPJ_P0089360	208 (aa)	-	-
MGP_LPJ_T0089361	-	3858	-	MGP_LPJ_P0089361	427 (aa)	-	-
MGP_LPJ_T0089362	-	1794	-	MGP_LPJ_P0089362	427 (aa)	-	-
MGP_LPJ_T0089363	-	754	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_LPJ_G0033746's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_LPJ_G0033746's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_LPJ_G0033746	Ddx39	90	30.392	MGP_LPJ_G0035462	Ddx3x	56	31.565
MGP_LPJ_G0033746	Ddx39	90	30.392	MGP_LPJ_G0016837	D1Pas1	57	31.565
MGP_LPJ_G0033746	Ddx39	87	33.156	MGP_LPJ_G0033607	Ddx49	97	33.333
MGP_LPJ_G0033746	Ddx39	86	38.108	MGP_LPJ_G0022580	Eif4a2	90	38.108
MGP_LPJ_G0033746	Ddx39	89	32.258	MGP_LPJ_G0031317	Ddx47	90	31.830
MGP_LPJ_G0033746	Ddx39	56	39.655	MGP_LPJ_G0019382	Gm5580	78	36.866
MGP_LPJ_G0033746	Ddx39	86	37.197	MGP_LPJ_G0019380	Eif4a3	89	37.197
MGP_LPJ_G0033746	Ddx39	56	39.655	MGP_LPJ_G0019381	Gm8994	78	36.866
MGP_LPJ_G0033746	Ddx39	85	31.183	MGP_LPJ_G0034434	Ddx25	81	31.328
MGP_LPJ_G0033746	Ddx39	90	34.074	MGP_LPJ_G0027644	Ddx20	50	34.140
MGP_LPJ_G0033746	Ddx39	74	34.969	MGP_LPJ_G0017928	Ddx56	61	32.051
MGP_LPJ_G0033746	Ddx39	90	31.807	MGP_LPJ_G0034035	Ddx19a	81	31.807
MGP_LPJ_G0033746	Ddx39	65	34.532	MGP_LPJ_G0034036	Ddx19b	75	34.532
MGP_LPJ_G0033746	Ddx39	100	90.888	MGP_LPJ_G0023543	Ddx39b	100	90.888