EuRBPDB

Description

Ensembl ID: MGP_LPJ_G0035002 (Gene tree)
Gene ID: -
Gene Symbol: Syncrip
Alias: 2610109K23Rik|4632417O19Rik|GRY-RBP|Hnrpq|Nsap1|Nsap1l|RRM RNA binding protein GRY-RBP|hnRNP Q|pp68
Full Name: synaptotagmin binding%2C cytoplasmic RNA interacting protein
Gene Type: protein_coding
Species: Mus_musculus_lpj
Status: putative
Strand: Minus strand
Length: 40287 bases
Position: chr9:89520557-89560843
Accession: 1891690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_LPJ_P0093263	RRM_5	PF13893.6	2.5e-06	1	1
MGP_LPJ_P0093266	RRM_5	PF13893.6	3.2e-06	1	1
MGP_LPJ_P0093264	RRM_5	PF13893.6	4.8e-06	1	1
MGP_LPJ_P0093261	RRM_5	PF13893.6	4.8e-06	1	1
MGP_LPJ_P0093267	RRM_5	PF13893.6	6.2e-06	1	1
MGP_LPJ_P0093264	RRM_1	PF00076.22	3e-44	1	3
MGP_LPJ_P0093264	RRM_1	PF00076.22	3e-44	2	3
MGP_LPJ_P0093264	RRM_1	PF00076.22	3e-44	3	3
MGP_LPJ_P0093261	RRM_1	PF00076.22	3e-44	1	3
MGP_LPJ_P0093261	RRM_1	PF00076.22	3e-44	2	3
MGP_LPJ_P0093261	RRM_1	PF00076.22	3e-44	3	3
MGP_LPJ_P0093267	RRM_1	PF00076.22	4.6e-44	1	3
MGP_LPJ_P0093267	RRM_1	PF00076.22	4.6e-44	2	3
MGP_LPJ_P0093267	RRM_1	PF00076.22	4.6e-44	3	3
MGP_LPJ_P0093263	RRM_1	PF00076.22	8.4e-43	1	3
MGP_LPJ_P0093263	RRM_1	PF00076.22	8.4e-43	2	3
MGP_LPJ_P0093263	RRM_1	PF00076.22	8.4e-43	3	3
MGP_LPJ_P0093266	RRM_1	PF00076.22	1.3e-42	1	3
MGP_LPJ_P0093266	RRM_1	PF00076.22	1.3e-42	2	3
MGP_LPJ_P0093266	RRM_1	PF00076.22	1.3e-42	3	3
MGP_LPJ_P0093262	RRM_1	PF00076.22	1.4e-31	1	2
MGP_LPJ_P0093262	RRM_1	PF00076.22	1.4e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_LPJ_T0093271	-	416	-	MGP_LPJ_P0093271	94 (aa)	-	-
MGP_LPJ_T0093270	-	2387	-	-	- (aa)	-	-
MGP_LPJ_T0093268	-	549	-	-	- (aa)	-	-
MGP_LPJ_T0093269	-	766	-	MGP_LPJ_P0093269	196 (aa)	-	-
MGP_LPJ_T0093266	-	1767	-	MGP_LPJ_P0093266	588 (aa)	-	-
MGP_LPJ_T0093267	-	1924	-	MGP_LPJ_P0093267	623 (aa)	-	-
MGP_LPJ_T0093264	-	3510	-	MGP_LPJ_P0093264	561 (aa)	-	-
MGP_LPJ_T0093265	-	1925	-	MGP_LPJ_P0093265	67 (aa)	-	-
MGP_LPJ_T0093262	-	3175	-	MGP_LPJ_P0093262	448 (aa)	-	-
MGP_LPJ_T0093263	-	3392	-	MGP_LPJ_P0093263	527 (aa)	-	-
MGP_LPJ_T0093261	-	9412	XM_006511293	MGP_LPJ_P0093261	562 (aa)	XP_006511356	Q7TMK9

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_LPJ_G0035002	Syncrip	58	52.308	MGP_LPJ_G0024964	A1cf	51	53.398
MGP_LPJ_G0035002	Syncrip	75	57.522	MGP_LPJ_G0029487	Rbm47	88	58.451
MGP_LPJ_G0035002	Syncrip	53	54.333	MGP_LPJ_G0027265	Rbm46	63	55.000