EuRBPDB

Description

Ensembl ID: MGP_LPJ_G0035573 (Gene tree)
Gene ID: -
Gene Symbol: Smarca1
Alias: 5730494M04Rik|Snf2l
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Mus_musculus_lpj
Status: putative
Strand: Minus strand
Length: 89245 bases
Position: chrX:43292469-43381713
Accession: 1935127
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_LPJ_P0095730	ResIII	PF04851.15	4.3e-12	1	1
MGP_LPJ_P0095729	ResIII	PF04851.15	1.1e-11	1	1
MGP_LPJ_P0095727	ResIII	PF04851.15	1.8e-11	1	1
MGP_LPJ_P0095726	ResIII	PF04851.15	1.8e-11	1	1
MGP_LPJ_P0095728	ResIII	PF04851.15	1.8e-11	1	1
MGP_LPJ_P0095726	DEAD	PF00270.29	1.2e-06	1	1
MGP_LPJ_P0095728	DEAD	PF00270.29	1.2e-06	1	1
MGP_LPJ_P0095727	DEAD	PF00270.29	1.3e-06	1	1
MGP_LPJ_P0095730	DEAD	PF00270.29	2.4e-06	1	1
MGP_LPJ_P0095729	DEAD	PF00270.29	3.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_LPJ_T0095729	-	2304	-	MGP_LPJ_P0095729	768 (aa)	-	-
MGP_LPJ_T0095728	-	4798	-	MGP_LPJ_P0095728	1046 (aa)	-	-
MGP_LPJ_T0095732	-	409	-	-	- (aa)	-	-
MGP_LPJ_T0095730	-	1965	-	MGP_LPJ_P0095730	381 (aa)	-	-
MGP_LPJ_T0095731	-	360	-	MGP_LPJ_P0095731	117 (aa)	-	-
MGP_LPJ_T0095727	-	3991	-	MGP_LPJ_P0095727	1062 (aa)	-	-
MGP_LPJ_T0095726	-	4024	XM_006541563	MGP_LPJ_P0095726	1046 (aa)	XP_006541626	Q6PGB8

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_LPJ_G0035573	Smarca1	68	31.488	MGP_LPJ_G0027979	Rad54b	66	31.229
MGP_LPJ_G0035573	Smarca1	71	30.490	MGP_LPJ_G0020577	Ercc6l2	82	30.353
MGP_LPJ_G0035573	Smarca1	72	45.247	MGP_LPJ_G0025024	Hells	65	47.410
MGP_LPJ_G0035573	Smarca1	61	32.031	MGP_LPJ_G0028531	Rad54l	66	33.267
MGP_LPJ_G0035573	Smarca1	93	84.280	MGP_LPJ_G0033726	Smarca5	98	81.953
MGP_LPJ_G0035573	Smarca1	75	43.101	MGP_LPJ_G0027568	Chd1l	62	44.000