EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_LPJ_G0035943 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc5
Alias: C820015E17
Full Name: poly(A) binding protein%2C cytoplasmic 5
Gene Type: protein_coding
Species: Mus_musculus_lpj
Status: putative
Strand: Plus strand
Length: 2970 bases
Position: chrX:117666540-117669509
Accession: 2136401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_LPJ_P0097024	RRM_5	PF13893.6	7.2e-12	1	2
MGP_LPJ_P0097024	RRM_5	PF13893.6	7.2e-12	2	2
MGP_LPJ_P0097025	RRM_5	PF13893.6	7.2e-12	1	2
MGP_LPJ_P0097025	RRM_5	PF13893.6	7.2e-12	2	2
MGP_LPJ_P0097024	RRM_1	PF00076.22	1.1e-77	1	4
MGP_LPJ_P0097024	RRM_1	PF00076.22	1.1e-77	2	4
MGP_LPJ_P0097024	RRM_1	PF00076.22	1.1e-77	3	4
MGP_LPJ_P0097024	RRM_1	PF00076.22	1.1e-77	4	4
MGP_LPJ_P0097025	RRM_1	PF00076.22	1.1e-77	1	4
MGP_LPJ_P0097025	RRM_1	PF00076.22	1.1e-77	2	4
MGP_LPJ_P0097025	RRM_1	PF00076.22	1.1e-77	3	4
MGP_LPJ_P0097025	RRM_1	PF00076.22	1.1e-77	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_LPJ_T0097024	-	2434	-	MGP_LPJ_P0097024	381 (aa)	-	Q8C7D3
MGP_LPJ_T0097025	-	2243	-	MGP_LPJ_P0097025	381 (aa)	-	-

Gene Model

Click here to download MGP_LPJ_G0035943's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_LPJ_G0035943's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_LPJ_G0035943	Pabpc5	96	61.111	MGP_LPJ_G0024286	Pabpc2	62	60.955
MGP_LPJ_G0035943	Pabpc5	93	33.333	MGP_LPJ_G0030871	Tia1	84	34.247
MGP_LPJ_G0035943	Pabpc5	94	37.037	MGP_LPJ_G0028358	Elavl2	89	37.037
MGP_LPJ_G0035943	Pabpc5	96	57.967	MGP_LPJ_G0027128	Pabpc4l	97	57.865
MGP_LPJ_G0035943	Pabpc5	96	56.944	MGP_LPJ_G0026769	Pabpc1l	64	57.022
MGP_LPJ_G0035943	Pabpc5	70	35.955	MGP_LPJ_G0017472	Celf5	66	34.426
MGP_LPJ_G0035943	Pabpc5	63	34.483	MGP_LPJ_G0034798	Celf6	51	34.483
MGP_LPJ_G0035943	Pabpc5	95	58.445	MGP_LPJ_G0023047	Pabpc6	59	58.470
MGP_LPJ_G0035943	Pabpc5	95	64.463	MGP_LPJ_G0021700	Pabpc1	58	64.607