EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0017249 (Gene tree)
Gene ID: -
Gene Symbol: Pcbp3
Alias: AlphaCP-3
Full Name: poly(rC) binding protein 3
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Minus strand
Length: 213052 bases
Position: chr10:84905183-85118234
Accession: 1890470
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0025654	KH_1	PF00013.29	2.9e-55	1	3
MGP_NODShiLtJ_P0025654	KH_1	PF00013.29	2.9e-55	2	3
MGP_NODShiLtJ_P0025654	KH_1	PF00013.29	2.9e-55	3	3
MGP_NODShiLtJ_P0025651	KH_1	PF00013.29	3e-55	1	3
MGP_NODShiLtJ_P0025651	KH_1	PF00013.29	3e-55	2	3
MGP_NODShiLtJ_P0025651	KH_1	PF00013.29	3e-55	3	3
MGP_NODShiLtJ_P0025653	KH_1	PF00013.29	3e-55	1	3
MGP_NODShiLtJ_P0025653	KH_1	PF00013.29	3e-55	2	3
MGP_NODShiLtJ_P0025653	KH_1	PF00013.29	3e-55	3	3
MGP_NODShiLtJ_P0025656	KH_1	PF00013.29	7.7e-19	1	1
MGP_NODShiLtJ_P0025654	KH_2	PF07650.17	3.9e-15	1	1
MGP_NODShiLtJ_P0025651	KH_2	PF07650.17	3.9e-15	1	1
MGP_NODShiLtJ_P0025653	KH_2	PF07650.17	3.9e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0025653	-	1748	-	MGP_NODShiLtJ_P0025653	371 (aa)	-	-
MGP_NODShiLtJ_T0025652	-	1736	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0025651	-	2013	-	MGP_NODShiLtJ_P0025651	371 (aa)	-	-
MGP_NODShiLtJ_T0025650	-	2099	XM_006513916	MGP_NODShiLtJ_P0025650	394 (aa)	XP_006513979	P57722
MGP_NODShiLtJ_T0025657	-	944	-	MGP_NODShiLtJ_P0025657	226 (aa)	-	-
MGP_NODShiLtJ_T0025656	-	605	-	MGP_NODShiLtJ_P0025656	160 (aa)	-	-
MGP_NODShiLtJ_T0025655	-	1095	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0025654	-	2544	-	MGP_NODShiLtJ_P0025654	370 (aa)	-	-
MGP_NODShiLtJ_T0025659	-	337	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0025658	-	717	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_NODShiLtJ_G0017249's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0017249's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0017249	Pcbp3	89	36.765	MGP_NODShiLtJ_G0022496	Igf2bp2	62	33.333
MGP_NODShiLtJ_G0017249	Pcbp3	66	33.582	MGP_NODShiLtJ_G0018843	Igf2bp1	60	33.333
MGP_NODShiLtJ_G0017249	Pcbp3	66	31.250	MGP_NODShiLtJ_G0027804	Fubp1	72	33.019
MGP_NODShiLtJ_G0017249	Pcbp3	69	40.351	MGP_NODShiLtJ_G0031556	-	50	40.845
MGP_NODShiLtJ_G0017249	Pcbp3	72	40.351	MGP_NODShiLtJ_G0019570	Nova1	59	40.351
MGP_NODShiLtJ_G0017249	Pcbp3	99	65.873	MGP_NODShiLtJ_G0030783	Pcbp1	99	68.033
MGP_NODShiLtJ_G0017249	Pcbp3	99	82.143	MGP_NODShiLtJ_G0022246	Pcbp2	99	78.338
MGP_NODShiLtJ_G0017249	Pcbp3	85	31.973	MGP_NODShiLtJ_G0025424	Fubp3	77	31.973
MGP_NODShiLtJ_G0017249	Pcbp3	79	41.667	MGP_NODShiLtJ_G0020473	Hnrnpk	77	50.649
MGP_NODShiLtJ_G0017249	Pcbp3	85	69.811	MGP_NODShiLtJ_G0035031	Pcbp4	93	70.652
MGP_NODShiLtJ_G0017249	Pcbp3	86	35.000	MGP_NODShiLtJ_G0030525	Igf2bp3	59	33.813