EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0017347 (Gene tree)
Gene ID: -
Gene Symbol: Cirbp
Alias: Cirp|R74941
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Plus strand
Length: 7893 bases
Position: chr10:88724056-88731948
Accession: 893588
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0025999	RRM_1	PF00076.22	5e-26	1	1
MGP_NODShiLtJ_P0026001	RRM_1	PF00076.22	1.2e-25	1	1
MGP_NODShiLtJ_P0026000	RRM_1	PF00076.22	1.3e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0026005	-	593	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0026004	-	894	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0026003	-	912	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0026002	-	376	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0026001	-	836	-	MGP_NODShiLtJ_P0026001	168 (aa)	-	-
MGP_NODShiLtJ_T0026000	-	1321	-	MGP_NODShiLtJ_P0026000	172 (aa)	-	-
MGP_NODShiLtJ_T0025999	-	423	XM_006513164	MGP_NODShiLtJ_P0025999	108 (aa)	XP_006513227	P60824

Gene Model

Click here to download MGP_NODShiLtJ_G0017347's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0017347's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0017347	Cirbp	88	43.243	MGP_NODShiLtJ_G0018774	Msi2	61	41.429
MGP_NODShiLtJ_G0017347	Cirbp	87	40.351	MGP_NODShiLtJ_G0029769	Msi1	51	38.983
MGP_NODShiLtJ_G0017347	Cirbp	82	33.333	MGP_NODShiLtJ_G0033137	Elavl1	75	33.333
MGP_NODShiLtJ_G0017347	Cirbp	85	40.244	MGP_NODShiLtJ_G0032890	Tial1	67	40.244
MGP_NODShiLtJ_G0017347	Cirbp	76	37.500	MGP_NODShiLtJ_G0028254	Elavl2	64	37.500
MGP_NODShiLtJ_G0017347	Cirbp	91	39.759	MGP_NODShiLtJ_G0026654	Pabpc1l	53	39.759
MGP_NODShiLtJ_G0017347	Cirbp	91	35.714	MGP_NODShiLtJ_G0030780	Tia1	80	37.778
MGP_NODShiLtJ_G0017347	Cirbp	99	60.588	MGP_NODShiLtJ_G0035337	Rbm3	100	63.529
MGP_NODShiLtJ_G0017347	Cirbp	73	36.709	MGP_NODShiLtJ_G0029583	Hnrnpdl	54	36.709
MGP_NODShiLtJ_G0017347	Cirbp	80	32.558	MGP_NODShiLtJ_G0025170	Celf2	82	33.333
MGP_NODShiLtJ_G0017347	Cirbp	84	31.868	MGP_NODShiLtJ_G0026633	Srsf6	61	31.868
MGP_NODShiLtJ_G0017347	Cirbp	84	38.889	MGP_NODShiLtJ_G0028383	Elavl4	70	38.889
MGP_NODShiLtJ_G0017347	Cirbp	56	45.000	MGP_NODShiLtJ_G0015900	Boll	56	45.833
MGP_NODShiLtJ_G0017347	Cirbp	92	42.105	MGP_NODShiLtJ_G0017353	Dazap1	74	47.273
MGP_NODShiLtJ_G0017347	Cirbp	94	38.614	MGP_NODShiLtJ_G0020467	Hnrnpa0	56	43.421
MGP_NODShiLtJ_G0017347	Cirbp	79	37.500	MGP_NODShiLtJ_G0034273	Elavl3	62	37.500
MGP_NODShiLtJ_G0017347	Cirbp	85	38.043	MGP_NODShiLtJ_G0022554	Ncbp2	54	36.471
MGP_NODShiLtJ_G0017347	Cirbp	78	40.476	MGP_NODShiLtJ_G0026770	Rbm38	74	38.043
MGP_NODShiLtJ_G0017347	Cirbp	68	34.247	MGP_NODShiLtJ_G0021234	Pspc1	69	41.304
MGP_NODShiLtJ_G0017347	Cirbp	83	38.776	MGP_NODShiLtJ_G0029581	Hnrnpd	84	36.559
MGP_NODShiLtJ_G0017347	Cirbp	70	44.737	MGP_NODShiLtJ_G0030538	Hnrnpa2b1	50	44.737
MGP_NODShiLtJ_G0017347	Cirbp	79	63.529	MGP_NODShiLtJ_G0035535	Rbmx	83	63.529