EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0017875 (Gene tree)
Gene ID: -
Gene Symbol: Ddx56
Alias: 2600001H07Rik|D11Ertd619e|NOH61|Noh61
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 56
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Minus strand
Length: 8851 bases
Position: chr11:3418497-3427347
Accession: 1277172
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0027740	ResIII	PF04851.15	9.5e-07	1	1
MGP_NODShiLtJ_P0027740	DEAD	PF00270.29	6.9e-40	1	1
MGP_NODShiLtJ_P0027742	DEAD	PF00270.29	5.8e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0027743	-	621	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0027742	-	764	-	MGP_NODShiLtJ_P0027742	237 (aa)	-	-
MGP_NODShiLtJ_T0027741	-	527	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0027740	-	1956	XM_011243731	MGP_NODShiLtJ_P0027740	546 (aa)	XP_011242033	Q9D0R4

Gene Model

Click here to download MGP_NODShiLtJ_G0017875's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0017875's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0017875	Ddx56	82	50.000	MGP_NODShiLtJ_G0019462	Ddx1	53	50.847
MGP_NODShiLtJ_G0017875	Ddx56	83	33.981	MGP_NODShiLtJ_G0034513	Ddx6	74	30.025
MGP_NODShiLtJ_G0017875	Ddx56	95	31.855	MGP_NODShiLtJ_G0033936	Ddx19b	73	30.151
MGP_NODShiLtJ_G0017875	Ddx56	81	30.102	MGP_NODShiLtJ_G0030700	Gm8994	81	30.208
MGP_NODShiLtJ_G0017875	Ddx56	99	35.887	MGP_NODShiLtJ_G0031223	Ddx47	86	38.889
MGP_NODShiLtJ_G0017875	Ddx56	75	32.642	MGP_NODShiLtJ_G0030699	Gm5580	54	32.642
MGP_NODShiLtJ_G0017875	Ddx56	97	30.041	MGP_NODShiLtJ_G0018394	Eif4a1	87	30.051
MGP_NODShiLtJ_G0017875	Ddx56	94	32.627	MGP_NODShiLtJ_G0033504	Ddx49	59	33.175
MGP_NODShiLtJ_G0017875	Ddx56	98	33.065	MGP_NODShiLtJ_G0026724	Ddx27	53	31.019
MGP_NODShiLtJ_G0017875	Ddx56	66	30.789	MGP_NODShiLtJ_G0016790	D1Pas1	52	30.159
MGP_NODShiLtJ_G0017875	Ddx56	66	30.366	MGP_NODShiLtJ_G0035370	Ddx3x	52	30.000
MGP_NODShiLtJ_G0017875	Ddx56	80	33.493	MGP_NODShiLtJ_G0018712	Ddx52	61	30.597
MGP_NODShiLtJ_G0017875	Ddx56	97	30.328	MGP_NODShiLtJ_G0022507	Eif4a2	63	30.736
MGP_NODShiLtJ_G0017875	Ddx56	61	32.051	MGP_NODShiLtJ_G0033644	Ddx39	74	34.969
MGP_NODShiLtJ_G0017875	Ddx56	92	53.061	MGP_NODShiLtJ_G0016284	Ddx18	56	39.583