EuRBPDB

Description

Ensembl ID: MGP_NODShiLtJ_G0018101 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnph1
Alias: AI642080|E430005G16Rik|Hnrnph|Hnrph|Hnrph1|Hnrph1 {ECO:0000313|EMBL:AAH42187.2,GN ECO:0000313|MGI:MGI:1891925}
Full Name: heterogeneous nuclear ribonucleoprotein H1
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Plus strand
Length: 12451 bases
Position: chr11:54902818-54915268
Accession: 1891925
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0028626	zf-RNPHF	PF08080.12	1.3e-22	1	1
MGP_NODShiLtJ_P0028627	zf-RNPHF	PF08080.12	1.3e-22	1	1
MGP_NODShiLtJ_P0028632	zf-RNPHF	PF08080.12	1.5e-22	1	1
MGP_NODShiLtJ_P0028626	RRM_1	PF00076.22	2e-32	1	3
MGP_NODShiLtJ_P0028626	RRM_1	PF00076.22	2e-32	2	3
MGP_NODShiLtJ_P0028626	RRM_1	PF00076.22	2e-32	3	3
MGP_NODShiLtJ_P0028627	RRM_1	PF00076.22	2e-32	1	3
MGP_NODShiLtJ_P0028627	RRM_1	PF00076.22	2e-32	2	3
MGP_NODShiLtJ_P0028627	RRM_1	PF00076.22	2e-32	3	3
MGP_NODShiLtJ_P0028632	RRM_1	PF00076.22	2.5e-32	1	3
MGP_NODShiLtJ_P0028632	RRM_1	PF00076.22	2.5e-32	2	3
MGP_NODShiLtJ_P0028632	RRM_1	PF00076.22	2.5e-32	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0028643	-	677	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0028642	-	810	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0028635	-	582	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0028640	-	163	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0028641	-	159	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0028634	-	860	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0028636	-	1724	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0028637	-	832	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0028627	-	2219	-	MGP_NODShiLtJ_P0028627	449 (aa)	-	-
MGP_NODShiLtJ_T0028626	-	2421	XM_006533875	MGP_NODShiLtJ_P0028626	449 (aa)	XP_006533938	O35737
MGP_NODShiLtJ_T0028632	-	2120	-	MGP_NODShiLtJ_P0028632	472 (aa)	-	-
MGP_NODShiLtJ_T0028633	-	1116	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0028630	-	3843	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0028631	-	870	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0028629	-	581	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0028628	-	4412	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0028638	-	582	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0028639	-	908	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0018101	Hnrnph1	62	94.500	MGP_NODShiLtJ_G0035851	-	98	94.500
MGP_NODShiLtJ_G0018101	Hnrnph1	54	88.764	MGP_NODShiLtJ_G0035495	-	90	88.764
MGP_NODShiLtJ_G0018101	Hnrnph1	60	64.474	MGP_NODShiLtJ_G0029512	Grsf1	92	65.333
MGP_NODShiLtJ_G0018101	Hnrnph1	90	60.923	MGP_NODShiLtJ_G0017170	Hnrnph3	99	59.673
MGP_NODShiLtJ_G0018101	Hnrnph1	78	33.333	MGP_NODShiLtJ_G0027876	-	51	33.333