EuRBPDB

Description

Ensembl ID: MGP_NODShiLtJ_G0018120 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpab
Alias: 3010025C11Rik|CBF-A|Cbf-a|Cgbfa|Hnrpab|Hnrpab {ECO:0000313|EMBL:EDL33661.1,GN ECO:0000313|MGI:MGI:1330294}|Hnrpab {ECO:0000313|EMBL:EDL33663.1,GN ECO:0000313|MGI:MGI:1330294}
Full Name: heterogeneous nuclear ribonucleoprotein A/B
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Minus strand
Length: 6760 bases
Position: chr11:56260041-56266800
Accession: 1330294
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0028712	CBFNT	PF08143.11	3.2e-19	1	1
MGP_NODShiLtJ_P0028713	CBFNT	PF08143.11	3.7e-19	1	1
MGP_NODShiLtJ_P0028714	CBFNT	PF08143.11	4.2e-19	1	1
MGP_NODShiLtJ_P0028712	RRM_1	PF00076.22	6.4e-34	1	2
MGP_NODShiLtJ_P0028712	RRM_1	PF00076.22	6.4e-34	2	2
MGP_NODShiLtJ_P0028713	RRM_1	PF00076.22	8.5e-34	1	2
MGP_NODShiLtJ_P0028713	RRM_1	PF00076.22	8.5e-34	2	2
MGP_NODShiLtJ_P0028714	RRM_1	PF00076.22	1e-33	1	2
MGP_NODShiLtJ_P0028714	RRM_1	PF00076.22	1e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0028714	-	1437	-	MGP_NODShiLtJ_P0028714	332 (aa)	-	-
MGP_NODShiLtJ_T0028713	-	2013	-	MGP_NODShiLtJ_P0028713	311 (aa)	-	-
MGP_NODShiLtJ_T0028712	-	2370	-	MGP_NODShiLtJ_P0028712	285 (aa)	-	Q99020

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0018120	Hnrnpab	51	33.846	MGP_NODShiLtJ_G0019842	Slirp	73	33.846
MGP_NODShiLtJ_G0018120	Hnrnpab	82	32.099	MGP_NODShiLtJ_G0028933	Tardbp	86	33.146
MGP_NODShiLtJ_G0018120	Hnrnpab	82	58.419	MGP_NODShiLtJ_G0029583	Hnrnpdl	89	57.292
MGP_NODShiLtJ_G0018120	Hnrnpab	81	70.940	MGP_NODShiLtJ_G0029581	Hnrnpd	100	88.000
MGP_NODShiLtJ_G0018120	Hnrnpab	64	37.368	MGP_NODShiLtJ_G0030538	Hnrnpa2b1	61	38.068
MGP_NODShiLtJ_G0018120	Hnrnpab	79	40.800	MGP_NODShiLtJ_G0029769	Msi1	58	48.052
MGP_NODShiLtJ_G0018120	Hnrnpab	57	35.882	MGP_NODShiLtJ_G0020467	Hnrnpa0	58	35.882
MGP_NODShiLtJ_G0018120	Hnrnpab	53	33.333	MGP_NODShiLtJ_G0033137	Elavl1	50	33.333
MGP_NODShiLtJ_G0018120	Hnrnpab	70	48.039	MGP_NODShiLtJ_G0018774	Msi2	100	52.212
MGP_NODShiLtJ_G0018120	Hnrnpab	65	31.414	MGP_NODShiLtJ_G0034700	Celf6	66	32.500
MGP_NODShiLtJ_G0018120	Hnrnpab	67	40.351	MGP_NODShiLtJ_G0017353	Dazap1	99	40.588