EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0019020 (Gene tree)
Gene ID: -
Gene Symbol: Rab5c
Alias: AI326010|Rab5C|Rabl
Full Name: RAB5C%2C member RAS oncogene family
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Minus strand
Length: 24007 bases
Position: chr11:110734815-110758821
Accession: 105306
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0032177	MMR_HSR1	PF01926.23	0.00021	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0032178	-	1967	-	MGP_NODShiLtJ_P0032178	234 (aa)	-	-
MGP_NODShiLtJ_T0032179	-	412	-	MGP_NODShiLtJ_P0032179	83 (aa)	-	-
MGP_NODShiLtJ_T0032177	-	1915	XM_006532586	MGP_NODShiLtJ_P0032177	216 (aa)	XP_006532649	P35278
MGP_NODShiLtJ_T0032180	-	441	-	MGP_NODShiLtJ_P0032180	34 (aa)	-	-

Gene Model

Click here to download MGP_NODShiLtJ_G0019020's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0019020's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0019020	Rab5c	83	30.000	MGP_NODShiLtJ_G0027505	Nras	99	33.333
MGP_NODShiLtJ_G0019020	Rab5c	55	31.707	MGP_NODShiLtJ_G0016389	Arl8a	62	31.707
MGP_NODShiLtJ_G0019020	Rab5c	86	39.785	MGP_NODShiLtJ_G0025488	Rab14	89	40.741
MGP_NODShiLtJ_G0019020	Rab5c	89	35.784	MGP_NODShiLtJ_G0019721	Rab15	95	35.784
MGP_NODShiLtJ_G0019020	Rab5c	71	35.948	MGP_NODShiLtJ_G0022069	Rabl2	67	35.948
MGP_NODShiLtJ_G0019020	Rab5c	98	40.845	MGP_NODShiLtJ_G0019228	Rab37	95	40.845
MGP_NODShiLtJ_G0019020	Rab5c	97	86.124	MGP_NODShiLtJ_G0017738	Rab5b	97	86.124
MGP_NODShiLtJ_G0019020	Rab5c	55	31.967	MGP_NODShiLtJ_G0030909	Arl8b	62	31.967
MGP_NODShiLtJ_G0019020	Rab5c	78	32.544	MGP_NODShiLtJ_G0031291	Kras	98	30.102
MGP_NODShiLtJ_G0019020	Rab5c	89	40.206	MGP_NODShiLtJ_G0021129	Rab2b	90	40.206
MGP_NODShiLtJ_G0019020	Rab5c	89	34.848	MGP_NODShiLtJ_G0036041	Rab9	97	34.848
MGP_NODShiLtJ_G0019020	Rab5c	94	41.379	MGP_NODShiLtJ_G0034993	Rab6b	98	41.379
MGP_NODShiLtJ_G0019020	Rab5c	89	35.859	MGP_NODShiLtJ_G0035888	Rab9b	97	35.859
MGP_NODShiLtJ_G0019020	Rab5c	81	31.250	MGP_NODShiLtJ_G0029158	Rheb	93	31.250
MGP_NODShiLtJ_G0019020	Rab5c	90	38.974	MGP_NODShiLtJ_G0027854	Rab2a	92	38.974
MGP_NODShiLtJ_G0019020	Rab5c	90	47.423	MGP_NODShiLtJ_G0026777	Rab22a	98	47.423
MGP_NODShiLtJ_G0019020	Rab5c	73	35.625	MGP_NODShiLtJ_G0017209	Rab36	60	35.625
MGP_NODShiLtJ_G0019020	Rab5c	90	41.262	MGP_NODShiLtJ_G0034740	Rab11a	88	49.630
MGP_NODShiLtJ_G0019020	Rab5c	78	32.544	MGP_NODShiLtJ_G0031397	Rasl2-9	77	32.544
MGP_NODShiLtJ_G0019020	Rab5c	73	31.875	MGP_NODShiLtJ_G0018616	Rab34	62	31.875
MGP_NODShiLtJ_G0019020	Rab5c	100	87.500	MGP_NODShiLtJ_G0023711	Rab5a	100	87.500
MGP_NODShiLtJ_G0019020	Rab5c	89	44.330	MGP_NODShiLtJ_G0024523	Rab1b	96	44.330
MGP_NODShiLtJ_G0019020	Rab5c	89	36.318	MGP_NODShiLtJ_G0035482	Rab33a	85	36.318
MGP_NODShiLtJ_G0019020	Rab5c	91	46.939	MGP_NODShiLtJ_G0023800	Rab31	98	46.939
MGP_NODShiLtJ_G0019020	Rab5c	86	38.806	MGP_NODShiLtJ_G0023809	Rab12	75	36.000
MGP_NODShiLtJ_G0019020	Rab5c	81	44.000	MGP_NODShiLtJ_G0032382	Rab6a	84	44.000
MGP_NODShiLtJ_G0019020	Rab5c	75	36.585	MGP_NODShiLtJ_G0035647	Rab39b	77	36.585
MGP_NODShiLtJ_G0019020	Rab5c	77	42.442	MGP_NODShiLtJ_G0030810	Rab7	90	49.296
MGP_NODShiLtJ_G0019020	Rab5c	93	37.379	MGP_NODShiLtJ_G0027010	Rab33b	89	37.379
MGP_NODShiLtJ_G0019020	Rab5c	89	41.089	MGP_NODShiLtJ_G0027215	Rab25	93	41.089
MGP_NODShiLtJ_G0019020	Rab5c	81	33.702	MGP_NODShiLtJ_G0033021	Hras	94	33.702
MGP_NODShiLtJ_G0019020	Rab5c	81	35.227	MGP_NODShiLtJ_G0015768	Rab23	74	35.227
MGP_NODShiLtJ_G0019020	Rab5c	89	43.590	MGP_NODShiLtJ_G0017921	Rab1a	95	43.590
MGP_NODShiLtJ_G0019020	Rab5c	75	48.447	MGP_NODShiLtJ_G0023355	Rab11b	74	48.447
MGP_NODShiLtJ_G0019020	Rab5c	78	42.012	MGP_NODShiLtJ_G0032323	Rab30	83	42.012