EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0019327 (Gene tree)
Gene ID: -
Gene Symbol: Rbfox3
Alias: D11Bwg0517e|Fox-3|Hrnbp3|NeuN|Neuna60
Full Name: RNA binding protein%2C fox-1 homolog (C. elegans) 3
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Minus strand
Length: 439176 bases
Position: chr11:130484320-130923495
Accession: 106368
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0033665	Fox-1_C	PF12414.8	2.3e-45	1	1
MGP_NODShiLtJ_P0033668	Fox-1_C	PF12414.8	2.3e-45	1	1
MGP_NODShiLtJ_P0033669	Fox-1_C	PF12414.8	2.3e-45	1	1
MGP_NODShiLtJ_P0033666	Fox-1_C	PF12414.8	2.4e-41	1	1
MGP_NODShiLtJ_P0033667	Fox-1_C	PF12414.8	2.5e-41	1	1
MGP_NODShiLtJ_P0033664	Fox-1_C	PF12414.8	2.9e-41	1	1
MGP_NODShiLtJ_P0033670	Fox-1_C	PF12414.8	1.6e-21	1	1
MGP_NODShiLtJ_P0033671	RRM_1	PF00076.22	3.1e-19	1	1
MGP_NODShiLtJ_P0033665	RRM_1	PF00076.22	1.5e-18	1	1
MGP_NODShiLtJ_P0033668	RRM_1	PF00076.22	1.5e-18	1	1
MGP_NODShiLtJ_P0033669	RRM_1	PF00076.22	1.6e-18	1	1
MGP_NODShiLtJ_P0033664	RRM_1	PF00076.22	1.9e-18	1	1
MGP_NODShiLtJ_P0033667	RRM_1	PF00076.22	2.1e-18	1	1
MGP_NODShiLtJ_P0033670	RRM_1	PF00076.22	1.9e-14	1	1
MGP_NODShiLtJ_P0033666	RRM_1	PF00076.22	0.0003	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0033669	-	2150	-	MGP_NODShiLtJ_P0033669	327 (aa)	-	-
MGP_NODShiLtJ_T0033668	-	1542	-	MGP_NODShiLtJ_P0033668	313 (aa)	-	-
MGP_NODShiLtJ_T0033665	-	2809	-	MGP_NODShiLtJ_P0033665	313 (aa)	-	-
MGP_NODShiLtJ_T0033664	-	3084	XM_006533722	MGP_NODShiLtJ_P0033664	360 (aa)	XP_006533785	Q8BIF2
MGP_NODShiLtJ_T0033667	-	3140	-	MGP_NODShiLtJ_P0033667	374 (aa)	-	-
MGP_NODShiLtJ_T0033666	-	1553	-	MGP_NODShiLtJ_P0033666	329 (aa)	-	-
MGP_NODShiLtJ_T0033672	-	301	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0033673	-	369	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0033670	-	710	-	MGP_NODShiLtJ_P0033670	145 (aa)	-	-
MGP_NODShiLtJ_T0033671	-	900	-	MGP_NODShiLtJ_P0033671	169 (aa)	-	-

Gene Model

Click here to download MGP_NODShiLtJ_G0019327's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0019327's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0019327	Rbfox3	100	71.930	MGP_NODShiLtJ_G0022321	Rbfox1	91	65.123
MGP_NODShiLtJ_G0019327	Rbfox3	67	39.130	MGP_NODShiLtJ_G0028543	Pabpc4	57	36.709
MGP_NODShiLtJ_G0019327	Rbfox3	72	31.429	MGP_NODShiLtJ_G0015900	Boll	62	46.154
MGP_NODShiLtJ_G0019327	Rbfox3	53	31.868	MGP_NODShiLtJ_G0032890	Tial1	81	31.111
MGP_NODShiLtJ_G0019327	Rbfox3	99	61.932	MGP_NODShiLtJ_G0021857	Rbfox2	91	61.972