EuRBPDB

Description

Ensembl ID: MGP_NODShiLtJ_G0020511 (Gene tree)
Gene ID: -
Gene Symbol: Ercc6l2
Alias: 0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278
Full Name: excision repair cross-complementing rodent repair deficiency%2C complementation group 6 like 2
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Plus strand
Length: 99169 bases
Position: chr13:67368615-67467783
Accession: 1923501
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0037136	ResIII	PF04851.15	1.5e-11	1	1
MGP_NODShiLtJ_P0037139	ResIII	PF04851.15	1.9e-11	1	1
MGP_NODShiLtJ_P0037135	ResIII	PF04851.15	2e-11	1	1
MGP_NODShiLtJ_P0037133	ResIII	PF04851.15	1e-10	1	1
MGP_NODShiLtJ_P0037138	ResIII	PF04851.15	1.3e-10	1	1
MGP_NODShiLtJ_P0037132	ResIII	PF04851.15	8.3e-10	1	1
MGP_NODShiLtJ_P0037136	DEAD	PF00270.29	3.5e-07	1	1
MGP_NODShiLtJ_P0037138	DEAD	PF00270.29	4.1e-07	1	1
MGP_NODShiLtJ_P0037139	DEAD	PF00270.29	5.2e-07	1	1
MGP_NODShiLtJ_P0037135	DEAD	PF00270.29	5.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0037139	-	2529	-	MGP_NODShiLtJ_P0037139	684 (aa)	-	-
MGP_NODShiLtJ_T0037138	-	1726	-	MGP_NODShiLtJ_P0037138	574 (aa)	-	-
MGP_NODShiLtJ_T0037135	-	2692	-	MGP_NODShiLtJ_P0037135	699 (aa)	-	-
MGP_NODShiLtJ_T0037134	-	1820	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0037137	-	1961	-	MGP_NODShiLtJ_P0037137	191 (aa)	-	-
MGP_NODShiLtJ_T0037136	-	1888	-	MGP_NODShiLtJ_P0037136	582 (aa)	-	-
MGP_NODShiLtJ_T0037133	-	3436	-	MGP_NODShiLtJ_P0037133	842 (aa)	-	-
MGP_NODShiLtJ_T0037132	-	1592	-	MGP_NODShiLtJ_P0037132	467 (aa)	-	Q9JIM3
MGP_NODShiLtJ_T0037140	-	759	-	MGP_NODShiLtJ_P0037140	152 (aa)	-	-
MGP_NODShiLtJ_T0037141	-	987	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0037142	-	2573	-	MGP_NODShiLtJ_P0037142	592 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0020511	Ercc6l2	81	30.021	MGP_NODShiLtJ_G0027458	Chd1l	50	32.657
MGP_NODShiLtJ_G0020511	Ercc6l2	74	31.115	MGP_NODShiLtJ_G0035472	Smarca1	68	30.784