EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0021633 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1
Alias: PABP|Pabp1|PabpI|Pabpl1|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Minus strand
Length: 14342 bases
Position: chr15:40597227-40611568
Accession: 1349722
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0040523	PABP	PF00658.18	8.8e-33	1	1
MGP_NODShiLtJ_P0040522	PABP	PF00658.18	9.3e-32	1	1
MGP_NODShiLtJ_P0040522	RRM_5	PF13893.6	2.6e-08	1	2
MGP_NODShiLtJ_P0040522	RRM_5	PF13893.6	2.6e-08	2	2
MGP_NODShiLtJ_P0040522	RRM_1	PF00076.22	2.9e-93	1	4
MGP_NODShiLtJ_P0040522	RRM_1	PF00076.22	2.9e-93	2	4
MGP_NODShiLtJ_P0040522	RRM_1	PF00076.22	2.9e-93	3	4
MGP_NODShiLtJ_P0040522	RRM_1	PF00076.22	2.9e-93	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0040524	-	725	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0040525	-	632	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0040526	-	866	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0040527	-	747	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0040522	-	2841	XM_011245339	MGP_NODShiLtJ_P0040522	710 (aa)	XP_011243641	P29341
MGP_NODShiLtJ_T0040523	-	489	-	MGP_NODShiLtJ_P0040523	117 (aa)	-	-
MGP_NODShiLtJ_T0040528	-	2775	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_NODShiLtJ_G0021633's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0021633's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0021633	Pabpc1	52	36.145	MGP_NODShiLtJ_G0028383	Elavl4	88	36.145
MGP_NODShiLtJ_G0021633	Pabpc1	51	32.450	MGP_NODShiLtJ_G0033137	Elavl1	95	32.450
MGP_NODShiLtJ_G0021633	Pabpc1	62	64.607	MGP_NODShiLtJ_G0035822	Pabpc5	95	64.463
MGP_NODShiLtJ_G0021633	Pabpc1	50	34.783	MGP_NODShiLtJ_G0032890	Tial1	100	33.083
MGP_NODShiLtJ_G0021633	Pabpc1	51	38.095	MGP_NODShiLtJ_G0030780	Tia1	87	38.095
MGP_NODShiLtJ_G0021633	Pabpc1	52	37.349	MGP_NODShiLtJ_G0028254	Elavl2	89	37.349
MGP_NODShiLtJ_G0021633	Pabpc1	100	87.081	MGP_NODShiLtJ_G0024199	Pabpc2	100	87.081
MGP_NODShiLtJ_G0021633	Pabpc1	98	56.063	MGP_NODShiLtJ_G0026654	Pabpc1l	99	56.063
MGP_NODShiLtJ_G0021633	Pabpc1	83	88.288	MGP_NODShiLtJ_G0026856	-	98	88.288
MGP_NODShiLtJ_G0021633	Pabpc1	64	67.493	MGP_NODShiLtJ_G0027002	Pabpc4l	97	69.277
MGP_NODShiLtJ_G0021633	Pabpc1	52	34.667	MGP_NODShiLtJ_G0029800	Rbm19	62	34.667
MGP_NODShiLtJ_G0021633	Pabpc1	52	36.145	MGP_NODShiLtJ_G0034273	Elavl3	92	36.145
MGP_NODShiLtJ_G0021633	Pabpc1	98	92.718	MGP_NODShiLtJ_G0028543	Pabpc4	100	94.928
MGP_NODShiLtJ_G0021633	Pabpc1	99	86.311	MGP_NODShiLtJ_G0022964	Pabpc6	99	86.311
MGP_NODShiLtJ_G0021633	Pabpc1	62	36.585	MGP_NODShiLtJ_G0027371	Celf3	91	35.616