EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0022964 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc6
Alias: 4932702K14Rik|AI428050|Pabpc3
Full Name: poly(A) binding protein%2C cytoplasmic 6
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Minus strand
Length: 3203 bases
Position: chr17:7462447-7465649
Accession: 1914793
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0045208	PABP	PF00658.18	1.4e-26	1	1
MGP_NODShiLtJ_P0045208	RRM_5	PF13893.6	3.5e-07	1	1
MGP_NODShiLtJ_P0045208	RRM_1	PF00076.22	1.9e-89	1	4
MGP_NODShiLtJ_P0045208	RRM_1	PF00076.22	1.9e-89	2	4
MGP_NODShiLtJ_P0045208	RRM_1	PF00076.22	1.9e-89	3	4
MGP_NODShiLtJ_P0045208	RRM_1	PF00076.22	1.9e-89	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0045208	-	3203	-	MGP_NODShiLtJ_P0045208	642 (aa)	-	Q9D4E6

Gene Model

Click here to download MGP_NODShiLtJ_G0022964's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0022964's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0022964	Pabpc6	62	36.145	MGP_NODShiLtJ_G0034273	Elavl3	92	36.145
MGP_NODShiLtJ_G0022964	Pabpc6	60	32.468	MGP_NODShiLtJ_G0028383	Elavl4	88	32.468
MGP_NODShiLtJ_G0022964	Pabpc6	58	64.497	MGP_NODShiLtJ_G0027002	Pabpc4l	98	64.497
MGP_NODShiLtJ_G0022964	Pabpc6	58	36.905	MGP_NODShiLtJ_G0030780	Tia1	96	36.905
MGP_NODShiLtJ_G0022964	Pabpc6	59	58.470	MGP_NODShiLtJ_G0035822	Pabpc5	95	58.445
MGP_NODShiLtJ_G0022964	Pabpc6	60	37.349	MGP_NODShiLtJ_G0028254	Elavl2	90	37.349
MGP_NODShiLtJ_G0022964	Pabpc6	53	35.526	MGP_NODShiLtJ_G0025961	Celf1	52	35.526
MGP_NODShiLtJ_G0022964	Pabpc6	57	34.667	MGP_NODShiLtJ_G0029800	Rbm19	63	34.667
MGP_NODShiLtJ_G0022964	Pabpc6	99	70.451	MGP_NODShiLtJ_G0024199	Pabpc2	99	70.451
MGP_NODShiLtJ_G0022964	Pabpc6	56	34.014	MGP_NODShiLtJ_G0032890	Tial1	100	31.783
MGP_NODShiLtJ_G0022964	Pabpc6	64	39.062	MGP_NODShiLtJ_G0034700	Celf6	73	39.062
MGP_NODShiLtJ_G0022964	Pabpc6	51	34.211	MGP_NODShiLtJ_G0025170	Celf2	57	34.211
MGP_NODShiLtJ_G0022964	Pabpc6	62	36.842	MGP_NODShiLtJ_G0024036	Celf4	62	36.842
MGP_NODShiLtJ_G0022964	Pabpc6	57	37.500	MGP_NODShiLtJ_G0027371	Celf3	80	37.500
MGP_NODShiLtJ_G0022964	Pabpc6	97	56.872	MGP_NODShiLtJ_G0026654	Pabpc1l	99	56.714
MGP_NODShiLtJ_G0022964	Pabpc6	99	83.495	MGP_NODShiLtJ_G0028543	Pabpc4	100	86.232
MGP_NODShiLtJ_G0022964	Pabpc6	84	80.180	MGP_NODShiLtJ_G0026856	-	99	80.180
MGP_NODShiLtJ_G0022964	Pabpc6	60	34.091	MGP_NODShiLtJ_G0035199	Rbms3	77	33.708
MGP_NODShiLtJ_G0022964	Pabpc6	99	86.311	MGP_NODShiLtJ_G0021633	Pabpc1	99	86.311