EuRBPDB

Description

Ensembl ID: MGP_NODShiLtJ_G0023455 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39b
Alias: 0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh|Uap56
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Plus strand
Length: 11919 bases
Position: chr17:37177990-37189908
Accession: 99240
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0047079	ResIII	PF04851.15	1.5e-07	1	1
MGP_NODShiLtJ_P0047078	ResIII	PF04851.15	2.3e-07	1	1
MGP_NODShiLtJ_P0047081	ResIII	PF04851.15	2.3e-07	1	1
MGP_NODShiLtJ_P0047083	ResIII	PF04851.15	2.3e-07	1	1
MGP_NODShiLtJ_P0047079	DEAD	PF00270.29	8e-39	1	1
MGP_NODShiLtJ_P0047078	DEAD	PF00270.29	1.2e-38	1	1
MGP_NODShiLtJ_P0047081	DEAD	PF00270.29	1.2e-38	1	1
MGP_NODShiLtJ_P0047083	DEAD	PF00270.29	1.2e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0047082	-	740	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0047083	-	1770	-	MGP_NODShiLtJ_P0047083	428 (aa)	-	-
MGP_NODShiLtJ_T0047080	-	1711	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0047081	-	2848	-	MGP_NODShiLtJ_P0047081	428 (aa)	-	-
MGP_NODShiLtJ_T0047079	-	3068	-	MGP_NODShiLtJ_P0047079	324 (aa)	-	-
MGP_NODShiLtJ_T0047078	-	1739	-	MGP_NODShiLtJ_P0047078	428 (aa)	-	Q9Z1N5

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0023455	Ddx39b	88	34.037	MGP_NODShiLtJ_G0031223	Ddx47	90	31.926
MGP_NODShiLtJ_G0023455	Ddx39b	100	90.888	MGP_NODShiLtJ_G0033644	Ddx39	100	90.888
MGP_NODShiLtJ_G0023455	Ddx39b	77	30.029	MGP_NODShiLtJ_G0019166	Ddx5	66	30.029
MGP_NODShiLtJ_G0023455	Ddx39b	86	38.919	MGP_NODShiLtJ_G0022507	Eif4a2	90	38.919
MGP_NODShiLtJ_G0023455	Ddx39b	91	33.333	MGP_NODShiLtJ_G0033936	Ddx19b	82	33.333
MGP_NODShiLtJ_G0023455	Ddx39b	63	30.804	MGP_NODShiLtJ_G0016790	D1Pas1	57	30.105
MGP_NODShiLtJ_G0023455	Ddx39b	90	35.659	MGP_NODShiLtJ_G0034513	Ddx6	79	35.659
MGP_NODShiLtJ_G0023455	Ddx39b	92	36.802	MGP_NODShiLtJ_G0018394	Eif4a1	95	36.802
MGP_NODShiLtJ_G0023455	Ddx39b	60	38.579	MGP_NODShiLtJ_G0030699	Gm5580	56	38.579
MGP_NODShiLtJ_G0023455	Ddx39b	85	38.356	MGP_NODShiLtJ_G0019335	Eif4a3	88	38.356
MGP_NODShiLtJ_G0023455	Ddx39b	84	31.903	MGP_NODShiLtJ_G0034335	Ddx25	82	32.020
MGP_NODShiLtJ_G0023455	Ddx39b	63	30.804	MGP_NODShiLtJ_G0035370	Ddx3x	56	30.105
MGP_NODShiLtJ_G0023455	Ddx39b	84	32.970	MGP_NODShiLtJ_G0026724	Ddx27	54	31.655
MGP_NODShiLtJ_G0023455	Ddx39b	86	32.891	MGP_NODShiLtJ_G0033504	Ddx49	97	33.046
MGP_NODShiLtJ_G0023455	Ddx39b	60	38.579	MGP_NODShiLtJ_G0030700	Gm8994	82	34.951