EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0024199 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc2
Alias: Pabp|Pabp+|Pabp2
Full Name: poly(A) binding protein%2C cytoplasmic 2
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Plus strand
Length: 2586 bases
Position: chr18:42029178-42031763
Accession: 1349723
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0049236	PABP	PF00658.18	1.8e-21	1	1
MGP_NODShiLtJ_P0049236	RRM_5	PF13893.6	8.4e-10	1	2
MGP_NODShiLtJ_P0049236	RRM_5	PF13893.6	8.4e-10	2	2
MGP_NODShiLtJ_P0049236	RRM_1	PF00076.22	2.1e-86	1	4
MGP_NODShiLtJ_P0049236	RRM_1	PF00076.22	2.1e-86	2	4
MGP_NODShiLtJ_P0049236	RRM_1	PF00076.22	2.1e-86	3	4
MGP_NODShiLtJ_P0049236	RRM_1	PF00076.22	2.1e-86	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0049236	-	2586	-	MGP_NODShiLtJ_P0049236	628 (aa)	-	Q62029

Gene Model

Click here to download MGP_NODShiLtJ_G0024199's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0024199's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0024199	Pabpc2	85	82.883	MGP_NODShiLtJ_G0026856	-	99	82.883
MGP_NODShiLtJ_G0024199	Pabpc2	57	35.443	MGP_NODShiLtJ_G0030780	Tia1	95	33.835
MGP_NODShiLtJ_G0024199	Pabpc2	59	34.940	MGP_NODShiLtJ_G0028383	Elavl4	88	34.940
MGP_NODShiLtJ_G0024199	Pabpc2	59	34.667	MGP_NODShiLtJ_G0029800	Rbm19	70	34.667
MGP_NODShiLtJ_G0024199	Pabpc2	63	38.554	MGP_NODShiLtJ_G0017421	Celf5	98	38.554
MGP_NODShiLtJ_G0024199	Pabpc2	61	64.167	MGP_NODShiLtJ_G0027002	Pabpc4l	95	68.098
MGP_NODShiLtJ_G0024199	Pabpc2	98	84.951	MGP_NODShiLtJ_G0028543	Pabpc4	100	87.681
MGP_NODShiLtJ_G0024199	Pabpc2	62	60.955	MGP_NODShiLtJ_G0035822	Pabpc5	96	61.111
MGP_NODShiLtJ_G0024199	Pabpc2	99	70.451	MGP_NODShiLtJ_G0022964	Pabpc6	99	70.451
MGP_NODShiLtJ_G0024199	Pabpc2	100	87.081	MGP_NODShiLtJ_G0021633	Pabpc1	100	87.081
MGP_NODShiLtJ_G0024199	Pabpc2	50	35.036	MGP_NODShiLtJ_G0032890	Tial1	98	34.921
MGP_NODShiLtJ_G0024199	Pabpc2	61	34.940	MGP_NODShiLtJ_G0034273	Elavl3	90	34.940
MGP_NODShiLtJ_G0024199	Pabpc2	59	36.145	MGP_NODShiLtJ_G0028254	Elavl2	89	36.145
MGP_NODShiLtJ_G0024199	Pabpc2	98	56.938	MGP_NODShiLtJ_G0026654	Pabpc1l	99	56.938