EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_NODShiLtJ_G0026269 (Gene tree)
Gene ID: -
Gene Symbol: Snrnp200
Alias: A330064G03Rik|Ascc3l1|BC011390|HELIC2|Kiaa0788|U5-200-KD|U5-200KD
Full Name: small nuclear ribonucleoprotein 200 (U5)
Gene Type: protein_coding
Species: Mus_musculus_nodshiltj
Status: putative
Strand: Plus strand
Length: 32689 bases
Position: chr2:143601682-143634370
Accession: 2444401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_NODShiLtJ_P0057149	ResIII	PF04851.15	3.1e-25	1	2
MGP_NODShiLtJ_P0057149	ResIII	PF04851.15	3.1e-25	2	2
MGP_NODShiLtJ_P0057149	DEAD	PF00270.29	4.1e-52	1	2
MGP_NODShiLtJ_P0057149	DEAD	PF00270.29	4.1e-52	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_NODShiLtJ_T0057152	-	741	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0057151	-	722	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0057150	-	593	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0057148	-	2923	-	-	- (aa)	-	-
MGP_NODShiLtJ_T0057149	-	6745	-	MGP_NODShiLtJ_P0057149	2136 (aa)	-	-

Gene Model

Click here to download MGP_NODShiLtJ_G0026269's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_NODShiLtJ_G0026269's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_NODShiLtJ_G0026269	Snrnp200	73	32.527	MGP_NODShiLtJ_G0029633	Hfm1	59	33.382
MGP_NODShiLtJ_G0026269	Snrnp200	86	41.641	MGP_NODShiLtJ_G0017072	Ascc3	81	43.852